e11e10c01c975653b7f0102601cabd52967d2c80
max
  Fri Aug 14 05:58:23 2026 -0700
lrSv: author-provided noyvertSv description, Vienna ONT naming, hs1 Lin update, refs #38099

- noyvertSv.html: replace the Description with the author-provided text
(imputation purpose, singletons excluded, subset-of-Vienna relationship)
- rename "1KG ONT Vienna" -> "1KG Vienna ONT" to match the subtrack and
merged-track labels (noyvertSv.html and the hs1 lrSv page)
- hs1 lrSv page: add the 1KG Lin merged subtrack (now native on T2T-CHM13,
614,522 SVs) and reorder the summary table and detail sections to match
the track (priority) order
- lrSv1kLin.html: link the source Lin et al. dataset on GitHub

diff --git src/hg/makeDb/trackDb/human/lrSv1kLin.html src/hg/makeDb/trackDb/human/lrSv1kLin.html
index 9d7706b33f3..21fddf920bd 100644
--- src/hg/makeDb/trackDb/human/lrSv1kLin.html
+++ src/hg/makeDb/trackDb/human/lrSv1kLin.html
@@ -73,32 +73,35 @@
 The insertion/deletion callset VCFs (GRCh38 and T2T-CHM13 native), already
 annotated with overall and per-superpopulation allele frequencies (EUR, AMR,
 EAS, AFR, SAS), were provided by the laboratories of Evan Eichler and Danny
 Miller (University of Washington). At UCSC the deletion and insertion records
 were converted to bigBed; no re-merging or re-annotation was performed. The
 step-by-step build commands (format conversion and bigBed build) are recorded
 in the UCSC makeDoc for this track container:
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank">
 doc/hg38/lrSv.txt</a>. The conversion script and autoSql schema live in
 <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank">
 makeDb/scripts/lrSv</a>, and the track configuration is in
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>.
 </p>
 
 <h2>Data Access</h2>
+<p>The source Lin et al. dataset is available 
+from <a href="https://github.com/jiadong324/1KG_LongRead_SV" target=_blank>Github</a>.</p>
+
 <p>
-The data can be explored interactively in table format with the
+The data on the Genome Browser can be explored interactively in table format with the
 <a href="../cgi-bin/hgTables">Table Browser</a> or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a> and exported from there
 to spreadsheet or tab-separated tables. From scripts, the data can be accessed
 through our <a href="https://api.genome.ucsc.edu">API</a>, track=<i>lrSv1kLin</i>.
 </p>
 <p>
 For automated download and analysis, the annotation is stored in bigBed files
 that can be downloaded from our download server:
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/lin1218.bb" target="_blank">
 http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/lin1218.bb</a> (GRCh38/hg38,
 native) and
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/lin1218.bb" target="_blank">
 http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/lin1218.bb</a> (T2T-CHM13/hs1,
 native). Individual regions or the whole annotation can be obtained with the
 <tt>bigBedToBed</tt> utility, which can be compiled from source or downloaded