44c00f07b0e94306e09f30c84ea6ab0f044e1a29
max
Fri Aug 14 05:09:12 2026 -0700
adding lin et al long-read SV subtrack, refs #38099
diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra
index 8c4e3e6627d..2084afa1e40 100644
--- src/hg/makeDb/trackDb/human/lrSvAll.ra
+++ src/hg/makeDb/trackDb/human/lrSvAll.ra
@@ -1,40 +1,40 @@
# AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
# Do not edit by hand - re-run the merge script and re-commit.
track lrSvAll
parent longReadVariants
bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb
shortLabel All LR SVs merged
longLabel All long-read SVs merged across subtracks by exact position, with per-database AC
type bigBed 9 +
itemRgb on
visibility pack
mouseOver Var: $name ($svType)
SV len: $svLen
Ins len: $insLen
Sources: $sources
AF range: $minAF-$maxAF
AC: $AC
- filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT 1019,1000G-ONT|1KG ONT UW 100,AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101,CARD|NIH CARD 351 (brain),Noyvert888|1KG ONT Boehringer 888
+ filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG Vienna ONT,1000G-ONT|1KG UW ONT,AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101,CARD|NIH CARD 351 (brain),Noyvert888|1KG Boehringer ONT,Lin1218|1KG Lin 1218 (merged)
filterType.sources multipleListOr
filterLabel.sources Source Database
filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,TRA,BND
filterType.svType multipleListOr
filterLabel.svType SV Type
filter.svLen 0:30000000
filterByRange.svLen on
filterLabel.svLen SV Length (bp)
filter.insLen 0:600000
filterByRange.insLen on
filterLabel.insLen Insertion Length (bp)
filter.maxAF 0:1
filterByRange.maxAF on
filterLimits.maxAF 0:1
filterLabel.maxAF Max Allele Frequency (across DBs)
filter.minAF 0:1
filterByRange.minAF on
filterLimits.minAF 0:1
filterLabel.minAF Min Allele Frequency (across DBs)
filter.AC 0:30000
filterByRange.AC on
filterLabel.AC Total AC (across DBs)
- filter.sourceCount 1:16
+ filter.sourceCount 1:17
filterByRange.sourceCount on
filterLabel.sourceCount Number of Source Databases
skipEmptyFields on
priority 0