44c00f07b0e94306e09f30c84ea6ab0f044e1a29 max Fri Aug 14 05:09:12 2026 -0700 adding lin et al long-read SV subtrack, refs #38099 diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra index 8c4e3e6627d..2084afa1e40 100644 --- src/hg/makeDb/trackDb/human/lrSvAll.ra +++ src/hg/makeDb/trackDb/human/lrSvAll.ra @@ -1,40 +1,40 @@ # AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py # Do not edit by hand - re-run the merge script and re-commit. track lrSvAll parent longReadVariants bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb shortLabel All LR SVs merged longLabel All long-read SVs merged across subtracks by exact position, with per-database AC type bigBed 9 + itemRgb on visibility pack mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Sources</b>: $sources<br><b>AF range</b>: $minAF-$maxAF<br><b>AC</b>: $AC - filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT 1019,1000G-ONT|1KG ONT UW 100,AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101,CARD|NIH CARD 351 (brain),Noyvert888|1KG ONT Boehringer 888 + filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG Vienna ONT,1000G-ONT|1KG UW ONT,AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101,CARD|NIH CARD 351 (brain),Noyvert888|1KG Boehringer ONT,Lin1218|1KG Lin 1218 (merged) filterType.sources multipleListOr filterLabel.sources Source Database filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,TRA,BND filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:30000000 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:600000 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.maxAF 0:1 filterByRange.maxAF on filterLimits.maxAF 0:1 filterLabel.maxAF Max Allele Frequency (across DBs) filter.minAF 0:1 filterByRange.minAF on filterLimits.minAF 0:1 filterLabel.minAF Min Allele Frequency (across DBs) filter.AC 0:30000 filterByRange.AC on filterLabel.AC Total AC (across DBs) - filter.sourceCount 1:16 + filter.sourceCount 1:17 filterByRange.sourceCount on filterLabel.sourceCount Number of Source Databases skipEmptyFields on priority 0