68944f2aab4d002e1ca85879bb4caf00b1eb72b0
max
  Mon Aug 17 15:39:19 2026 -0700
lrSv: correct HPRC2 linear callset note - not used in Lin et al merge

Remove claim from lrSv.html that a linear HPRC2 callset was included for the
Lin et al. merge. Add a sentence to the lrSv1kLin methods explaining that the
HPRC year 2 linear callset was used only for comparison and did not contribute
to the merged callset, with a link to that callset. refs #38099

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index 67ddadc1626..17d6732899d 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -292,31 +292,31 @@
   <td>Linear-reference-based</td>
   <td><a href="hgTrackUi?g=gustafsonSv">1KG UW ONT</a></td>
 </tr>
 <tr>
   <td>Boehringer ONT 888</td>
   <td>888</td>
   <td>Noyvert et al., Imputation of structural variants using a multi-ancestry long-read sequencing panel enables identification of disease associations</td>
   <td>Oxford Nanopore long reads (5 ancestry groups)</td>
   <td>Sniffles2</td>
   <td><a href="hgTrackUi?g=noyvertSv">1KG Boehringer ONT 888</a></td>
 </tr>
 <tr>
   <td>HPRC2 Minigraph-Cactus</td>
   <td>232</td>
   <td>Lucas et al., HPRC2: a human pangenome reference with near-complete coverage of common genetic variation</td>
-  <td>Near-T2T assembly (30x-60x HiFi+ONT), <a target="_blank" href="https://github.com/wwliao/hprc_release2_variant_calling">a linear callset</a> was included for the Lin et al. merge. </td>
+  <td>Near-T2T assembly (30x-60x HiFi+ONT)</td>
   <td>Minigraph-cactus graph</td>
   <td><a href="hgTrackUi?g=hprc2v21Sv">HPRC v2.1</a></td>
 </tr>
 <tr>
   <td>HGSVC3</td>
   <td>65</td>
   <td>Logsdon et al., Complex genetic variation in nearly complete human genomes</td>
   <td>Near-T2T assembly (37-40x HiFi+ONT)</td>
   <td>Linear-reference-based</td>
   <td><a href="hgTrackUi?g=hgsvc3Sv">HGSVC3</a></td>
 </tr>
 </table>
 
 <h3><a href="hgTrackUi?g=colorsDbSv">CoLoRSdb SVs</a></h3>
 <p>