92ba8f72d864456a8a026f52bf90b9e0560b5482 hiram Thu Sep 17 09:33:04 2026 -0700 provide access to the alpha.hub.txt versions for the group index pages on genome-test refs #35415 diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk index f2ada0e4d31..a14f9940a7b 100644 --- src/hg/makeDb/doc/asmHubs/asmHubs.mk +++ src/hg/makeDb/doc/asmHubs/asmHubs.mk @@ -85,31 +85,31 @@ @[ -d ${hubsDownload} ] && true || mkdir ${hubsDownload} @for html in ${indexName} ${statsName} ${dataName} ; do \ [ -L ${hubsDownload}/$${html}.html ] && true || ln -s ${asmHubSrc}/$${html}.html ${hubsDownload} ; \ [ -L ${hubsDownload}/download.$${html}.html ] && true || ln -s ${asmHubSrc}/download.$${html}.html ${hubsDownload} ; \ done @for txt in groups hub genomes download.genomes ; do \ [ -L ${hubsDownload}/$${txt}.txt ] && true || ln -s ${asmHubSrc}/$${txt}.txt ${hubsDownload} ; \ done @for json in assemblyList ; do \ [ -L ${hubsDownload}/$${json}.json ] && true || ln -s ${asmHubSrc}/$${json}.json ${hubsDownload} ; \ done hubIndex:: rm -f ${destDir}/${testIndexName}.html ${destDir}/${indexName}.html ${destDir}/download.${indexName}.html ${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} ${orderList} | sed -e 's#${name}/hub.txt#${name}/${hubFile}.txt#;' > ${destDir}/download.${indexName}.html - sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g; s#genome.ucsc.edu#genome-test.gi.ucsc.edu#;" ${destDir}/download.${indexName}.html > ${destDir}/${indexName}.html + sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g; s#genome.ucsc.edu#genome-test.gi.ucsc.edu#; s#/hub.txt#/alpha.hub.txt#" ${destDir}/download.${indexName}.html > ${destDir}/${indexName}.html chmod +x ${destDir}/${indexName}.html ${destDir}/download.${indexName}.html asmStats:: rm -f ${destDir}/download.${statsName}.html ${destDir}/${statsName}.html ${destDir}/${testStatsName}.html ${toolsDir}/mkAsmStats.pl ${Name} ${name} ${orderList} > ${destDir}/download.${statsName}.html sed -e "s#genome.ucsc.edu/h/#genome-test.gi.ucsc.edu/h/#g; s/hgdownload.soe/hgdownload-test.gi/g;" ${destDir}/download.${statsName}.html > ${destDir}/${statsName}.html chmod +x ${destDir}/${statsName}.html ${destDir}/download.${statsName}.html # trackData makes different tables for the test vs. production version. # both are built in a single trackData.pl pass now, so each assembly's # tracks are only measured once instead of twice. # the two pages are written to .new temporary files first, and only # 'mv'ed into their real names once trackData.pl has completely finished. # symlinks elsewhere point directly at ${dataName}.html/download.${dataName}.html, # and 'mv' within the same directory is an atomic rename, so those