af9b41f1305c39290da8b597f232ac0a19dda0a9 jnavarr5 Fri Sep 18 14:53:06 2026 -0700 Reformatting both episignatures mouseOvers to bold label then value, adding the OMIM number back to the EpigenCentral mouseOver, and raising maxWindowCoverage from 200000 to 10000000 on both subtracks so multi-megabase views draw as items rather than the coverage graph, with the makedoc visibility paragraph updated to match, refs #38112 #38371 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> diff --git src/hg/makeDb/doc/hg38/episignatures.txt src/hg/makeDb/doc/hg38/episignatures.txt index 7ec1c97b09a..03df792690b 100644 --- src/hg/makeDb/doc/hg38/episignatures.txt +++ src/hg/makeDb/doc/hg38/episignatures.txt @@ -274,19 +274,27 @@ # epigenCentral 1 51 # Lou asked on the ticket for downloads to be off, so the stanza has "tableBrowser off" # and the Data Access section points at EpigenCentral's own portal and repository. That # switch covers the Table Browser, the Data Integrator and the REST API; the bigBed # still sits in /gbdb and is reachable on hgdownload, so it is not a hard block, and QA # should confirm with the lab that this is what they wanted. # Visibility: the track is sparse almost everywhere, 15,035 sites over the genome, but it # has one hot spot at the HOXA cluster. Measured heights at 1100px wide, pack, with no # other track on: # chr7:27,140,000-27,250,000 (110 kb) 961 px # chr7:27,000,000-28,000,000 (1 Mb) 1937 px # chr7 (whole chromosome) 3345 px # There is no automatic fallback at any of those, so the stanza has the same -# maxWindowCoverage 200000 as methaDory. Above 200 kb the track draws as a coverage -# graph, 81 px, and below it stays in pack with the probe IDs, which is the point of -# zooming in. The 110 kb view is still tall; a reader who does not want the labels can -# switch that one to squish, 121 px. +# maxWindowCoverage as methaDory. It was 200000 at first and raised to 10000000 on +# 2026-09-18, because 200 kb sent most gene-neighbourhood views to the coverage graph. +# Above that the track draws as a coverage graph, 81 px, and below it stays in pack. +# +# Heights at 1100 px wide, HOXA hot spot unless noted, for the tall views this allows: +# epigenCentral methaDory +# 200 kb pack 1281 px 1889 px +# 1 Mb pack 1937 px 5729 px +# 5 Mb pack 2129 px 7777 px +# 10 Mb pack 2193 px 8273 px +# 10 Mb squish 553 px 825 px +# 10 Mb, typical region pack 353 px 2769 px