78ce99c531fbd268466313d5b7ac1c7ba80defe1 jnavarr5 Fri Sep 18 17:22:34 2026 -0700 Updating a claude complaint about the makedoc since we updated the labels, refs #38308 diff --git src/hg/makeDb/doc/mm10/mouseStrainsCactus.txt src/hg/makeDb/doc/mm10/mouseStrainsCactus.txt index 0bae8c303ee..61b44977554 100644 --- src/hg/makeDb/doc/mm10/mouseStrainsCactus.txt +++ src/hg/makeDb/doc/mm10/mouseStrainsCactus.txt @@ -18,31 +18,31 @@ # track so users do not have to remember to attach the hub. Nothing is copied # into /gbdb; bigDataUrl, summary and frames all point at the download server # over https. This follows the hg38 cactus241wayBM track, which serves its # bigMaf and frames from hgdownload the same way. # # Consequence to be aware of: the 8.8 GB file is read over HTTP by every # browser node, so the first read of a region on a machine with a cold UDC # cache pays a network round trip. If that turns out to be too slow, the # 41 MB summary file (which is what zoomed-out views read) is the one worth # symlinking into /gbdb/mm10/, not the 8.8 GB alignment. # The hub's own trackDb stanza is at # https://hgdownload.soe.ucsc.edu/hubs/mouseStrains/mm10/mm10.bigMaf.trackDb.txt # and the native stanza differs from it in these ways: # - track renamed from the generic "bigMaf" to mouseStrainsCactus -# - shortLabel "Mice Strains" -> "Strain Alignments", longLabel reworded +# - shortLabel "Mice Strains" -> "Mouse Strain Alignments", longLabel reworded # - visibility full -> hide (off by default, per #38308) # - speciesOrder replaced by speciesGroups/sGroup_, splitting the strains # into wild-derived, classical laboratory and outgroup. Those three # sGroup_ tags were added to trackDb/tagTypes.tab. # - speciesLabels added so the side labels read 129S1/SvImJ rather than # 129S1_SvImJ. Note that hgTracks runs these labels through hgDirForOrg(), # which turns spaces into underscores, so a label has to be one word # ("Rat", not "Rat rn6"). # - itemFirstCharCase noChange, so strain names keep their capitalization # - the outgroup group is named Rat/rn6; a slash in an sGroup_ tag name # passes tdbQuery -strict and renders fine # - treeImage phylo/mouseStrains_18way.png (already in htdocs/images/phylo/) # - speciesCodonDefault mm10, color/altColor to match our other maf tracks # Verified in the sandbox at each zoom level, all served from the remote files: