fec6f772c9613d436f976c315673bfb5f4ce3262 mspeir Thu Sep 17 14:45:58 2026 -0700 relatedTracks.ra: put back the hg19 ensGene entry, refs #38016 The audit commit dropped three ensGene lines but only justified two. Ensembl Genes is retired on hg38 and mm10, but it is still a live track on hg19: the table has 204,940 rows and hgTrackUi?db=hg19&g=ensGene renders on the RR. knownGene is public on hg19 too, so the entry met the commit's own test and should have stayed. Its removal took a working related-track pointer off the hg19 Ensembl Genes page. Found in the v504 code review, #38354. Co-Authored-By: Claude Opus 5 (1M context) diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra index a8125dece4f..024fe07cadc 100644 --- src/hg/makeDb/trackDb/relatedTracks.ra +++ src/hg/makeDb/trackDb/relatedTracks.ra @@ -225,30 +225,31 @@ hg38 >transMapV5 transMapV6 The current version of the TransMap alignments hg38 knownGeneArchive wgEncodeGencodeSuper All transcripts from each GENCODE release, including sets never used as the default gene track hg38 wgEncodeGencodeSuper knownGeneArchive Previous default gene tracks, one per GENCODE release hg38 >genePredArchive knownGene The current default gene set hg19 >caddSuper caddSuper1_7 The newer CADD release, with an updated model and training set hg19 >cosmicRegions cosmicMuts Individual somatic mutations from the current COSMIC release (V101) hg19 dbSnp155Composite dbSnpArchive Older dbSNP builds, kept for reproducing earlier analyses hg19 dbSnpArchive dbSnp155Composite The dbSNP release currently used by the Browser hg19 >gtexGene gtexGeneV8 The newer GTEx release, 54 tissues from 948 donors hg19 >covidHgiGwas covidHgiGwasR4Pval A later release of the same COVID-19 Host Genetics Initiative meta-analysis hg19 >transMapV5 transMapV6 The current version of the TransMap alignments hg19 knownGeneArchive wgEncodeGencodeSuper All transcripts from each GENCODE release, including sets never used as the default gene track hg19 wgEncodeGencodeSuper knownGeneArchive Previous default gene tracks, one per GENCODE release hg19 >genePredArchive knownGene The current default gene set +hg19 >ensGene knownGene The current GENCODE gene set, which shares its annotation with Ensembl mm39 knownGeneArchive wgEncodeGencodeSuper All transcripts from each GENCODE release, including sets never used as the default gene track mm39 wgEncodeGencodeSuper knownGeneArchive Previous default gene tracks, one per GENCODE release mm10 >transMapV5 transMapV6 The current version of the TransMap alignments # Clinical variant database cross-links: hg38 clinvar hgmd Disease-causing mutations curated from the literature by HGMD; the public release lags the licensed version hg38 hgmd clinvar Variant interpretations submitted by clinical laboratories, with review status and conflicts hg38 clinvar lovdComp Variants collected in the gene-specific Leiden Open Variation Database instances hg38 lovdComp clinvar Variant interpretations submitted by clinical laboratories worldwide hg38 clinvar decipherContainer Patient variants and CNVs from the DECIPHER developmental disorder database hg38 decipherContainer clinvar Variant interpretations submitted by clinical laboratories, with review status hg38 clinvarMapped clinvar The original, directly submitted ClinVar variant records hg38 clinvar clinvarMapped Coding variants projected onto paralogous loci by sequence homology