Genome Browser source code
The Genome Browser source code consists of all of the software files necessary to build and compile a full mirror site of the Genome Browser on your own server. Additionally, it builds more than 200 bioinformatics command-line utilities. You must also obtain and install Apache, MySQL and other software packages (see ‘system requirements’).
One time setup fee: $7,200
Cost per year per user: $1,200 (5 users minimum)
Cost for non-profit academic research use: Free
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LiftOver program
The LiftOver program can be used to convert coordinate ranges between genome assemblies. This is a command-line tool, and supports forward/reverse conversions, batch conversions, and conversions between species. The LiftOver program requires a UCSC-generated over.chain file as input. Pre-generated files are available for selected assemblies from the downloads page.
Cost per year: $1,200
Cost for non-profit academic research use: Free
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UCSC chain files
Cost per year per user: $1,200
Cost for non-profit academic research use: Free
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Genome Browser in the Cloud (GBiC)
Genome Browser in the Cloud (GBiC) is a convenient program that automates the setup of a UCSC Genome Browser mirror, including the installation and setup of MySQL (or MariaDB) and Apache servers. The program downloads and configures MySQL and Apache, then downloads the UCSC Genome Browser software to /usr/local/apache. The program can also be used to mirror full or partial assembly databases, keep up-to-date with the Genome Browser software, remove temporary files, and install the Kent command line utilities.
-You can use the GBiC program to install a Genome Browser mirror on any Linux based operating system, including your server, desktop/laptop, or cloud instance. The program overwrites the default Apache install location, and thus is intended to be run on machines/cloud instances that don’t already act as a web server. A more detailed description of this tool and how to use it is available from the GBIC User Guide. If you have questions about the script please send an email to the publicly archived Genome Browser Mirror mailing list: genome-mirror@soe.ucsc.edu.
+You can use the GBiC program to install a Genome Browser mirror on any Linux based operating system, including your server, desktop/laptop, or cloud instance. The program overwrites the default Apache install location, and thus is intended to be run on machines/cloud instances that don’t already act as a web server. A more detailed description of this tool and how to use it is available from the GBIC User Guide. If you have questions about the script please send an email to the publicly archived Genome Browser Mirror mailing list: genome-mirror@soe.ucsc.edu.
One time setup fee: $2,400
Cost per year: $1,200
Cost for non-profit academic research use: Free
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Genome Browser Docker image
The Genome Browser Docker image is a complete UCSC Genome Browser mirror in a container, with the Genome Browser software, an Apache web server, and a MariaDB database server all included. Everything runs inside the container, so the image does not touch the Apache or MySQL setup already on your machine. This makes it useful on a laptop, or on a server that already runs other web software.
-UCSC publishes a prebuilt image on Docker Hub as genomebrowser/server. It is rebuilt for every Genome Browser release, and one tag covers both Intel and Apple Silicon machines, so most people can pull the image rather than build it themselves. You can also build the image yourself on any system that runs Docker, including Windows, macOS, and Linux. Once the container starts, you open the mirror in a web browser at a port on your own machine. The container downloads track data from UCSC as you use it, and you can attach a Docker volume to keep your data and settings when the container restarts. A more detailed description of the image and how to use it is available from the Docker Help Page. If you have questions about the image please send an email to the publicly archived Genome Browser Mirror mailing list: genome-mirror@soe.ucsc.edu.
+UCSC publishes a prebuilt image on Docker Hub as genomebrowser/server. It is rebuilt for every Genome Browser release, and one tag covers both Intel and Apple Silicon machines, so most people can pull the image rather than build it themselves. You can also build the image yourself on any system that runs Docker, including Windows, macOS, and Linux. Once the container starts, you open the mirror in a web browser at a port on your own machine. The container downloads track data from UCSC as you use it, and you can attach a Docker volume to keep your data and settings when the container restarts. A more detailed description of the image and how to use it is available from the Docker Help Page. If you have questions about the image please send an email to the publicly archived Genome Browser Mirror mailing list: genome-mirror@soe.ucsc.edu.
One time setup fee: $2,400
Cost per year: $1,200
Cost for non-profit academic research use: Free
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