e5759993329b6e609e9ab825991a90283e714088 mspeir Wed Sep 9 11:17:57 2026 -0700 Help pages: fix broken internal links and restore anchors people still cite, refs #38062 Three groups of anchor problems on the help and FAQ pages. Broken internal links, five pages: posters.html listed a 2022 section that does not exist (no 2022 posters), api.html listed REST and JSON separately after the two sections were merged, docker.html pointed at a #UsrAcct section that is not on that page, FAQgenes.html had a capitalized #ncbiRefSeq where the anchor is #ncbiRefseq, and the genomes.txt settings rows in trackDbHub.v3.html carried no anchors so its own "genome" link missed. Retired anchors that are still cited in twenty years of answers on the genome list. Content moved to its own page and the old anchor was deleted rather than left behind, so the citations land at the top of the page. Reattached seven numeric FAQformat anchors to the Topics entry linking to each format's page. BED, PSL, GFF and GTF were removed from the custom track page in 2012 and never added back to its list of supported formats; added them with the old anchors, which fixes customTrack.html and hgTracksHelp.html together since both include customTrackText.html. Also restored #lines there, and #Session on hgTrackHubHelp.html and #link4 on FAQlink.html. Section anchors on six pages that had none, so a support answer can link to one part of them: bam.html, hic.html, bedgraph.html, ftp.html, net.html and trackDbIndexBb.html. Skipped quickLiftChain.html, oligoMatch.html and cutters.html, which are track description fragments included into the details page rather than standalone pages. Co-Authored-By: Claude Opus 5 (1M context) diff --git src/hg/htdocs/goldenPath/help/posters.html src/hg/htdocs/goldenPath/help/posters.html index 44a596e5c3f..896ccd7288b 100755 --- src/hg/htdocs/goldenPath/help/posters.html +++ src/hg/htdocs/goldenPath/help/posters.html @@ -1,563 +1,562 @@

UCSC Genome Browser Poster Gallery

Biology of Genomes 2026 UCSC Genome Browser 2026: Storage for your track hubs, lift any tracks, edit annotations & new tracks: long-read SVs, short-read SNVs, tandem repeats and NMD escape Biology of Genomes 2026 preview
ISV 2026 UCSC Genome Browser 2026: Latest resources for variant analysis ISV 2026 preview
ASHG 2025 UCSC Genome Browser: Latest resources for variant interpretation ASHG 2025 preview
ESHG 2025 UCSC Genome Browser Track Decorators ESHG 2025 poster preview
Biology of Genomes 2025 UCSC Genome Browser: HubSpace Track Storage Biology of Genomes 2025 preview
Biology of Genomes 2024 Viewing Human Pangenome Research Consortium (HPRC) data on the UCSC Genome Browser Biology of Genomes 2024 preview
VEPTC 2024 UCSC Genome Browser: Latest developments for variant interpretation VEPTC 2024 preview
ICTE 2024 Visualizing transposable elements with the UCSC Genome Browser ICTE 2024 preview
ISV 2024 UCSC Genome Browser: Latest resources for variant interpretation ISV 2024 preview
Biology of Genomes 2023 Visualizing genomic rearrangements with the UCSC Genome Browser snakes display BoG 2023 preview
ASHG 2023 quickLift: Lifting UCSC Genome Browser annotations on demand ASHG 2023 preview
CSHL 2023 GenArk: Towards A Million Genome Browsers CSHL 2023 preview
CSHL 2021 UCSC Genome Browser in the Cloud (GBiC) CSHL 2021 preview
PAG 2020 UCSC Genome Browser REST API Returning Assembly Hub JSON Data PAG 2020 preview
ASHG 2020 Visualizing Hi-C chromatin interactions in the UCSC Genome Browser ASHG 2020 preview
PAG 2019 Annotating Variants and Displaying Multiple Alignments on Your Assemblies Using the UCSC Genome Browser PAG 2019 preview
ASHG 2019 UCSC Genome Browser: New Interact Format and GeneHancer Data ASHG 2019 preview
Biology of Genomes 2018 GTEx resources and new 'barChart' and 'interacton' track displays inspired by GTEx BoG 2018 preview
UCSC PostDoc 2018 Visualizing RNA-seq data in the UCSC Genome Browser PostDoc 2018 preview
Genome Informatics 2017 HGVS variant nomenclature in the UCSC Genome Browser Genome Informatics 2017 preview
ACMG 2016 Visualize and Analyze Your Genomic Data on the UCSC Genome Browser ACMG 2016 preview
GTEx 2016 GTEx Data in the UCSC Genome Browser 2016 Update GTEx 2016 preview
ICHG 2016 Visualize and Analyze Your Genomic Data on the UCSC Genome Browser ICHG 2016 preview
CSHL 2016 Evaluation of off-target and on-target scoring algorithms: Integration into crispor.org and the UCSC Genome Browser CSHL 2016 preview
Biology of Genomes 2016 New UCSC Genome Browser Views: Exon-Only, Gene-Only, Alternate Haplotypes, and Custom Regions BoG 2016 preview
ACMG 2015 UCSC Genome Browser and Variant Annotation Integrator ACMG 2015 preview
UC-wide Bioeng 2015 Use The UCSC Genome Browser To Visualize And Analyze Your Genomic Data Bioeng 2015 preview
Genome 10K 2015 Assembly Hubs and Genome Browser in a Box Makes Viewing Private Annotations and Custom Sequences Easy G10K 2015 preview
GTEx 2015 GTEx Data in the UCSC Genome Browser GTEx 2015 preview
BoG 2015 The Data Integrator: a new way to combine data sources underlying the UCSC Genome Browser BoG 2015 preview
HUPO 2015 Visualizing proteomics data in genomic context using the UCSC Genome Browser HUPO 2015 preview