1f5a5224a1eae411c945406c4e1adb2d5b18ebcb braney Tue Sep 22 10:46:35 2026 -0700 genarkLiftOverTest: set genarkLiftOver in the test's own conf, refs #38328 genarkLiftOverDbs returns NULL before it looks at anything when genarkLiftOver is not set, so the test read as "0 back" on every line and went red on an hg.conf that does not have the option. The build account's conf does not have it. The test now writes its own conf and sets the option, the same way geoMirrorSelfTest sets browser.node. diff --git src/hg/lib/tests/makefile src/hg/lib/tests/makefile index d0fad04ad10..ad760a8ae3a 100644 --- src/hg/lib/tests/makefile +++ src/hg/lib/tests/makefile @@ -1,175 +1,180 @@ kentSrc = ../../.. include ../../../inc/common.mk L += ${MYSQLLIBS} -lm MYLIBDIR = ../../../lib/${MACHTYPE} MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a BIN_DIR = bin/${MACHTYPE} all: ${BIN_DIR}/genePredTester \ ${BIN_DIR}/trashDirTester \ ${BIN_DIR}/mallocTopPadTester \ ${BIN_DIR}/pslReaderTester \ ${BIN_DIR}/quickLiftTester \ ${BIN_DIR}/sessionDataTester \ ${BIN_DIR}/binTest \ ${BIN_DIR}/customTrackTester \ ${BIN_DIR}/hgvsTester \ ${BIN_DIR}/sqlCheck # annoGratorTester is left out, like the annoGratorTest target below. A commented # line inside the list above would comment out every entry after it, because the # backslash on the line before joins them into one line. ${BIN_DIR}/%: %.c ${MYLIBS} @${MKDIR} ${BIN_DIR} ${CC} ${CC_PROG_OPTS} -o $@ $*.c ${MYLIBS} $L #test: binTest spDbTest hdbTest genePredTest pslReaderTest annoGratorTest customTrackTest hgvsTest test: binTest quickLiftTest sessionDataTest trashDirTest mallocTopPadTest \ hVarSubstHtmlTest dataVersionPathTest genarkLiftOverTest \ snapshotTypeTest sessionDirTest geoMirrorSelfTest asForDbTest spDbTest hdbTest genePredTest pslReaderTest customTrackTest hgvsTest rm -r output echo tested all mkdirs: @${MKDIR} output ${BIN_DIR} loaders: ln -sf ${CGI_BIN}/loader . spDbTest: ${BIN_DIR}/spDbTest mkdirs ${BIN_DIR}/spDbTest sp121210 Q9FFH7 > output/spDbTest ${BIN_DIR}/spDbTest sp121210 P29312 >> output/spDbTest diff expected/spDbTest output/spDbTest hdbTest: ${BIN_DIR}/hdbTest mkdirs ${BIN_DIR}/hdbTest > output/hdbTest diff expected/hdbTest output/hdbTest genePredTest: ${BIN_DIR}/genePredTester mkdirs ${MAKE} -f genePredTests.mk test pslReaderTest: ${BIN_DIR}/pslReaderTester mkdirs ${MAKE} -f pslReaderTests.mk test #annoGratorTest: ${BIN_DIR}/annoGratorTester mkdirs # ${MAKE} -f annoGratorTests.mk test customTrackTest: ${BIN_DIR}/customTrackTester loaders mkdirs ${MAKE} -f customTrackTests.mk test BIN_DIR=${BIN_DIR} OUT_DIR=output hgvsTest: ${BIN_DIR}/hgvsTester mkdirs ${MAKE} -f hgvsTests.mk test binTest: mkdirs ${BIN_DIR}/binTest @./binTest.sh quickLiftTest: ${BIN_DIR}/quickLiftTester mkdirs ${BIN_DIR}/quickLiftTester > output/quickLiftTest diff expected/quickLiftTest output/quickLiftTest sessionDataTest: ${BIN_DIR}/sessionDataTester mkdirs ${BIN_DIR}/sessionDataTester output/sessionData > output/sessionDataTest diff expected/sessionDataTest output/sessionDataTest # Three runs, because hgConfig caches the config it read, so one process can only answer for # one spelling of sessionDataDir. The fixture is made here rather than in C: a directory, a # symlink to it, and three confs naming the same place three ways. Each conf includes the # developer's own so the database settings come along, and is mode 600 because hgConfig # refuses a group-readable file whose name begins with a dot -- these do not, but the habit is # worth keeping. trashDirTest: ${BIN_DIR}/trashDirTester mkdirs rm -rf output/sd ${MKDIR} output/sd/real/hgt ln -s real output/sd/link echo "include ${HOME}/.hg.conf" > output/sd/link.conf echo "sessionDataDir=`pwd`/output/sd/link" >> output/sd/link.conf echo "include ${HOME}/.hg.conf" > output/sd/real.conf echo "sessionDataDir=`pwd`/output/sd/real" >> output/sd/real.conf echo "include ${HOME}/.hg.conf" > output/sd/rel.conf echo "sessionDataDir=output/sd/link" >> output/sd/rel.conf HGDB_CONF=output/sd/link.conf ${BIN_DIR}/trashDirTester \ "the symlink, absolute" `pwd`/output/sd/link `pwd`/output/sd/real \ > output/trashDirTest HGDB_CONF=output/sd/real.conf ${BIN_DIR}/trashDirTester \ "the resolved directory, absolute" `pwd`/output/sd/link `pwd`/output/sd/real \ >> output/trashDirTest HGDB_CONF=output/sd/rel.conf ${BIN_DIR}/trashDirTester \ "the symlink, relative" `pwd`/output/sd/link `pwd`/output/sd/real \ >> output/trashDirTest diff expected/trashDirTest output/trashDirTest # Twice: once with the setting and once without, because the answer is the DIFFERENCE between # them. A single run could pass on a library whose own default happened to be large. mallocTopPadTest: ${BIN_DIR}/mallocTopPadTester mkdirs echo "include ${HOME}/.hg.conf" > output/topPadOff.conf echo "include ${HOME}/.hg.conf" > output/topPadOn.conf echo "mallocTopPad=33554432" >> output/topPadOn.conf HGDB_CONF=output/topPadOff.conf ${BIN_DIR}/mallocTopPadTester > output/mallocTopPadTest HGDB_CONF=output/topPadOn.conf ${BIN_DIR}/mallocTopPadTester >> output/mallocTopPadTest diff expected/mallocTopPadTest output/mallocTopPadTest hVarSubstHtmlTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/hVarSubstHtmlTester hVarSubstHtmlTester.c ${MYLIBS} $L ${BIN_DIR}/hVarSubstHtmlTester > output/hVarSubstHtmlTest diff expected/hVarSubstHtmlTest output/hVarSubstHtmlTest dataVersionPathTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/dataVersionPathTester dataVersionPathTester.c ${MYLIBS} $L ${BIN_DIR}/dataVersionPathTester > output/dataVersionPathTest diff expected/dataVersionPathTest output/dataVersionPathTest +# genarkLiftOver is set in the conf rather than assumed. genarkLiftOverDbs returns nothing +# at all when the option is off, so a developer's own hg.conf without it turns every line of +# the expected output into "0 back" and the test goes red for a reason that is not the code. genarkLiftOverTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/genarkLiftOverTester genarkLiftOverTester.c ${MYLIBS} $L - ${BIN_DIR}/genarkLiftOverTester > output/genarkLiftOverTest + echo "include ${HOME}/.hg.conf" > output/genarkLiftOver.conf + echo "genarkLiftOver=on" >> output/genarkLiftOver.conf + HGDB_CONF=output/genarkLiftOver.conf ${BIN_DIR}/genarkLiftOverTester > output/genarkLiftOverTest diff expected/genarkLiftOverTest output/genarkLiftOverTest snapshotTypeTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/snapshotTypeTester snapshotTypeTester.c ${MYLIBS} $L ${BIN_DIR}/snapshotTypeTester > output/snapshotTypeTest diff expected/snapshotTypeTest output/snapshotTypeTest sessionDirTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/sessionDirTester sessionDirTester.c ${MYLIBS} $L ${BIN_DIR}/sessionDirTester > output/sessionDirTest diff expected/sessionDirTest output/sessionDirTest # browser.node is set in the conf rather than assumed, since a developer's own hg.conf need # not have one. geoMirrorSelfTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/geoMirrorSelfTester geoMirrorSelfTester.c ${MYLIBS} $L echo "include ${HOME}/.hg.conf" > output/geoNode.conf echo "browser.node=1" >> output/geoNode.conf HGDB_CONF=output/geoNode.conf ${BIN_DIR}/geoMirrorSelfTester > output/geoMirrorSelfTest diff expected/geoMirrorSelfTest output/geoMirrorSelfTest # NOT in the test target above, and waiting on one grant. This is the one test here that # WRITES to a central database, so it is pointed at hgcentralregress, # which exists for tests and which nothing else reads. makeHgCentralRegress.sh creates it and # is safe to run every time. login.cookieSalt is set because the sync signature is made with # it; the value is a test value and means nothing outside this run. hubSpaceKeysTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/hubSpaceKeysTester hubSpaceKeysTester.c ${MYLIBS} $L ./makeHgCentralRegress.sh > /dev/null echo "include ${HOME}/.hg.conf" > output/regress.conf echo "central.db=hgcentralregress" >> output/regress.conf echo "login.cookieSalt=testSaltForRegressRuns" >> output/regress.conf HGDB_CONF=output/regress.conf ${BIN_DIR}/hubSpaceKeysTester > output/hubSpaceKeysTest diff expected/hubSpaceKeysTest output/hubSpaceKeysTest # It runs as soon as central.user has UPDATE and DELETE on hgcentralregress; see # makeHgCentralRegress.sh for the grant. Add it to the test target on that day. # The conf a CGI reads, not the developer's own: isGenArk() needs genarkHubPrefix, which is # set in the shared one. asForDbTest: mkdirs ${CC} ${CC_PROG_OPTS} -o ${BIN_DIR}/asForDbTester asForDbTester.c ${MYLIBS} $L echo "include /usr/local/apache/cgi-bin/hg.conf" > output/genark.conf HGDB_CONF=output/genark.conf ${BIN_DIR}/asForDbTester > output/asForDbTest 2>&1 diff expected/asForDbTest output/asForDbTest sqlCheck: ${BIN_DIR}/sqlCheck mkdirs ${MAKE} -f sqlCheck.mk test BIN_DIR=${BIN_DIR} OUT_DIR=output clean: rm -rf *.o bin output *.tmp loader udcCache