4a6fab6dc819469ff2a299cd310ee19994d7e03a hiram Fri Sep 25 15:08:49 2026 -0700 allow a T2T name column refs #38110 diff --git src/hg/utils/automation/aliasTextToBed.pl src/hg/utils/automation/aliasTextToBed.pl index 81a4d091d38..56a881238ee 100755 --- src/hg/utils/automation/aliasTextToBed.pl +++ src/hg/utils/automation/aliasTextToBed.pl @@ -63,30 +63,31 @@ close (SZ); my %nameLabels = ( "assembly" => "Assembly", "genbank" => "GenBank", "ncbi" => "NCBI", "refseq" => "RefSeq", "ucsc" => "UCSC", "ensembl" => "Ensembl", "xenbase" => "Xenbase", "chrNames" => "chrNames", "chrN" => "chrN", "VEuPathDB" => "VEuPathDB", "hprcV2" => "HPRCv2", "plasmoDB" => "PlasmoDB", + "T2T" => "T2T", "custom" => "custom" ); open (AS, ">$opt_aliasAs") or die "can not write to $opt_aliasAs"; my $indexNames; $titleLine =~ s/^#\s+//; my @legendNames = split('\s+', $titleLine); my $expectFieldCount = scalar(@legendNames); my $i = 0; # output the .as definition printf AS "table chromAlias\n"; printf AS " \"chromAlias bigBed index\"\n"; printf AS " (\n";