Individual regions or the whole genome annotation can be obtained using our tool bigWigToBedGraph, which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries are on the utilities download page. The tool can also be used to obtain features within a given range, e.g. bigWigToBedGraph http://hgdownload.soe.ucsc.edu/gbdb/$db/proCapNet/pred/K562.proCapNet.pos.bw -chrom=chr21 -start=0 -end=100000000 stdout
The ProCapNet models are on the ENCODE portal as -BPNet-model annotations, one per cell line, linked from the Experiment column of -the table on this page. Each annotation also holds the trained model, sequence +BPNet-model annotations, one per cell line, linked from the ENCODE model +column of the table above. Each annotation also holds the trained model, sequence contribution scores and predicted signal over a selected set of regions. The genome-wide predictions shown here are not part of that ENCODE release.
ProCapNet was developed by Kelly Cochran in the Kundaje lab at Stanford University. The genome-wide predictions and contribution scores were generated by Kelly Cochran in collaboration with the GENCODE consortium. Thanks to Kelly Cochran and Anshul Kundaje for making the data available.