cf3a4c948a0285f6e0ba711688679c904b07e178 jnavarr5 Fri Sep 25 14:40:33 2026 -0700 Adding related tracks for the EpiCentral track, refs #38112 diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra index b26a54f52f0..4eacfd8c47a 100644 --- src/hg/makeDb/trackDb/relatedTracks.ra +++ src/hg/makeDb/trackDb/relatedTracks.ra @@ -623,26 +623,30 @@ # One-way: MaveMD carries a snapshot of ClinVar and gnomAD annotations from the MaveDB API, # so point readers at our always-current tracks. No reciprocal line, since MaveMD is too # narrow to be worth listing on two of the most heavily used tracks we have. hg38 >mavemd clinvar Our current ClinVar release, rather than the snapshot MaveMD's calibrations were computed against hg38 >mavemd gnomadVariants Our current gnomAD release, rather than the frequencies MaveMD supplies with each measurement # Constraint score cross-links: hg38 constraintSuper predictionScoresSuper Per-variant deleteriousness and pathogenicity scores, rather than regional constraint hg38 predictionScoresSuper constraintSuper Regional and gene-level constraint measured from population variation hg38 ~jarvis ukbDepletion Another score for how depleted of variation a non-coding region is hg38 ~hmc gnomadPLI Another constraint metric derived from the absence of variation in population data hg38 hmc ucscGenePfam The Pfam protein domains that homologous missense constraint is calculated over hg38 ucscGenePfam hmc Missense constraint measured across homologous positions within these domains hg38 promoterAi jarvis A score prioritizing non-coding regions more broadly, not only promoters hg38 jarvis promoterAi A deep-learning predictor for variants in promoter regions specifically +hg38 epigenCentral epicV2illuminaMethylation Array probes that include every CpG site in this track +hg38 epicV2illuminaMethylation epigenCentral CpG probes of this array that are part of curated DNA methylation episignatures +hg38 epigenCentral snpArrayIllumina850k Array probes that include nearly all CpG sites in this track +hg38 snpArrayIllumina850k epigenCentral CpG probes of this array that are part of curated DNA methylation episignatures hg19 constraintSuper predictionScoresSuper Per-variant deleteriousness and pathogenicity scores, rather than regional constraint hg19 predictionScoresSuper constraintSuper Regional and gene-level constraint measured from population variation hg19 ~jarvis ukbDepletion Another score for how depleted of variation a non-coding region is hg19 ~hmc gnomadPLI Another constraint metric derived from the absence of variation in population data hg19 hmc ucscGenePfam The Pfam domains that homologous missense constraint is calculated over hg19 ucscGenePfam hmc Missense constraint measured across homologous positions within these domains # mm10 mouse strain cross-links: mm10 mm10Strains1 mouseStrainsCactus Whole-genome alignment of the 16 strain assemblies to the reference mm10 mouseStrainsCactus mm10Strains1 Alternate strain sequences mapped to their reference genome location