31e95f0d1dd4ca08feba9b081a356527bd4b45e6
markd
  Sat Sep 26 20:36:20 2026 -0700
Drop the hand-built Files column from the TSS faceted tables. refs #35528

UCSC will generate the download links in the faceted table, so the Files column
each composite built for itself is redundant. Remove downloadCell, the Files
header and cell, the Files entry in subtrackUrls, and the DOWNLOAD constant that
only fed them. The table is now Tissue, Sample class, Experiment, Cell line on
all three composites. writeMetadata no longer needs db or track; the metadata
files it writes are byte-identical.

Lead each Data Access section with the link to the hgdownload directory, since
that is now the way to a single file, and keep the naming convention beside it.
Drop the paragraph describing the Files column.

diff --git src/hg/makeDb/trackDb/human/encode4ProCap.html src/hg/makeDb/trackDb/human/encode4ProCap.html
index 91a78676c91..1a5f1b8a93c 100644
--- src/hg/makeDb/trackDb/human/encode4ProCap.html
+++ src/hg/makeDb/trackDb/human/encode4ProCap.html
@@ -66,58 +66,56 @@
 and ENCSR799DGV for A673, Caco-2, Calu3, HUVEC, K562 and MCF10A respectively.
 </p>
 
 <p>
 The steps are recorded in
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/transcriptionStart.txt"
 target="_blank">doc/hg38/transcriptionStart.txt</a> and the scripts are in
 <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/outside/proCapNet"
 target="_blank">makeDb/outside/proCapNet</a>, including
 <tt>proCapNetEncodeFiles.tsv</tt>, which records exactly which ENCODE file
 accessions went into each track.
 </p>
 
 <h2>Data Access</h2>
 
+<p>
+The bigWig files are on our
+<a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4ProCap/" target="_blank">download
+server</a>, named for the cell line, the ENCODE experiment accession and the
+strand, for example <tt>K562.ENCSR261KBX.pos.bw</tt> and
+<tt>K562.ENCSR261KBX.neg.bw</tt>.
+</p>
+
 <p>
 The data can be explored interactively in table format with the
 <a href="../cgi-bin/hgTables">Table Browser</a> or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a> and exported from there to
 spreadsheet or tab-sep tables. From scripts, the data can be accessed through our
 <a href="https://api.genome.ucsc.edu" target="_blank">API</a>. The API returns one
 bigWig at a time, so name a single strand of one cell line rather than the
 container, for example track=<i>encode4ProCap_K562_procap_pos</i>.
 </p>
 
 <p>
-The Files column of the table on this page links each cell line's bigWigs
-directly, so a single file can be fetched without working out its path.
-</p>
-
-<p>
-For automated download and analysis, the genome annotation is stored in bigWig
-files that can be downloaded from
-<a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4ProCap/" target="_blank">our
-download server</a>. The files are named for the cell line, the ENCODE experiment accession and the
-strand, for example <tt>K562.ENCSR261KBX.pos.bw</tt> and
-<tt>K562.ENCSR261KBX.neg.bw</tt>. Individual regions or the whole
-genome annotation can be obtained using our tool <tt>bigWigToBedGraph</tt>, which
-can be compiled from the source code or downloaded as a precompiled binary for
-your system. Instructions for downloading source code and binaries are on the
+Individual regions or the whole genome annotation can be obtained using our tool
+<tt>bigWigToBedGraph</tt>, which can be compiled from the source code or
+downloaded as a precompiled binary for your system. Instructions for downloading
+source code and binaries are on the
 <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads"
-target="_blank">utilities download page</a>.
-The tool can also be used to obtain features within a given range, e.g.
+target="_blank">utilities download page</a>. The tool can also be used to obtain
+features within a given range, e.g.
 <tt>bigWigToBedGraph http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4ProCap/K562.ENCSR261KBX.pos.bw
 -chrom=chr21 -start=0 -end=100000000 stdout</tt>
 </p>
 
 <p>
 The unmerged per-replicate files can be downloaded from the
 <a href="https://www.encodeproject.org" target="_blank">ENCODE portal</a> under the
 experiment accessions listed above.
 </p>
 
 <h2>Credits</h2>
 
 <p>
 PRO-cap data was generated as part of ENCODE by Sagar Shah and the Yu and Lis labs
 at Cornell University. Thanks to the ENCODE Consortium and the ENCODE production