af96452e1c6ccf783697cead2630de1ca4e91635
markd
  Sat Sep 26 06:42:20 2026 -0700
Put the primary citation first again on the TSS track pages. refs #35528

Alphabetical order buried the paper each track is actually built on: Cochran
et al. for ProCapNet, behind Avsec, and Shah et al. for the ENCODE 4 PRO-cap
experiments, behind Kwak and Luo. Lead with the primary paper and leave the
rest in the order they stood.

Reordering only. The years and DOIs added in 38ccb38771e are unchanged.

diff --git src/hg/makeDb/trackDb/human/proCapNet.html src/hg/makeDb/trackDb/human/proCapNet.html
index 115357b1507..09390d9a4b9 100644
--- src/hg/makeDb/trackDb/human/proCapNet.html
+++ src/hg/makeDb/trackDb/human/proCapNet.html
@@ -183,47 +183,47 @@
 contribution scores and predicted signal over a selected set of regions. The
 genome-wide predictions shown here are not part of that ENCODE release.
 </p>
 
 <h2>Credits</h2>
 
 <p>
 ProCapNet was developed by Kelly Cochran in the Kundaje lab at Stanford
 University. The genome-wide predictions and contribution scores were generated by
 Kelly Cochran in collaboration with the GENCODE consortium. Thanks to Kelly
 Cochran and Anshul Kundaje for making the data available.
 </p>
 
 <h2>References</h2>
 
+<p>
+Cochran K, Yin M, Mantripragada A, Schreiber J, Marinov GK, Shah SR, Yu H, Lis JT, Kundaje A.
+<a href="https://www.ncbi.nlm.nih.gov/pubmed/38853896" target="_blank">
+Dissecting the cis-regulatory syntax of transcription initiation with deep learning</a>.
+<em>bioRxiv</em>. 2024 Nov 21;.
+DOI: <a href="https://doi.org/10.1101/2024.05.28.596138"
+target="_blank">10.1101/2024.05.28.596138</a>; PMID: <a
+href="https://www.ncbi.nlm.nih.gov/pubmed/38853896" target="_blank">38853896</a>; PMC: <a
+href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11160661/" target="_blank">PMC11160661</a>
+</p>
+
 <p>
 Avsec &#381;, Weilert M, Shrikumar A, Krueger S, Alexandari A, Dalal K, Fropf R, McAnany C, Gagneur J,
 Kundaje A <em>et al</em>.
 <a href="https://www.ncbi.nlm.nih.gov/pubmed/33603233" target="_blank">
 Base-resolution models of transcription-factor binding reveal soft motif syntax</a>.
 <em>Nat Genet</em>. 2021 Mar;53(3):354-366.
 DOI: <a href="https://doi.org/10.1038/s41588-021-00782-6"
 target="_blank">10.1038/s41588-021-00782-6</a>; PMID: <a
 href="https://www.ncbi.nlm.nih.gov/pubmed/33603233" target="_blank">33603233</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812996/" target="_blank">PMC8812996</a>
 </p>
 
-<p>
-Cochran K, Yin M, Mantripragada A, Schreiber J, Marinov GK, Shah SR, Yu H, Lis JT, Kundaje A.
-<a href="https://www.ncbi.nlm.nih.gov/pubmed/38853896" target="_blank">
-Dissecting the cis-regulatory syntax of transcription initiation with deep learning</a>.
-<em>bioRxiv</em>. 2024 Nov 21;.
-DOI: <a href="https://doi.org/10.1101/2024.05.28.596138"
-target="_blank">10.1101/2024.05.28.596138</a>; PMID: <a
-href="https://www.ncbi.nlm.nih.gov/pubmed/38853896" target="_blank">38853896</a>; PMC: <a
-href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11160661/" target="_blank">PMC11160661</a>
-</p>
-
 <p>
 Kwak H, Fuda NJ, Core LJ, Lis JT.
 <a href="https://www.ncbi.nlm.nih.gov/pubmed/23430654" target="_blank">
 Precise maps of RNA polymerase reveal how promoters direct initiation and pausing</a>.
 <em>Science</em>. 2013 Feb 22;339(6122):950-3.
 DOI: <a href="https://doi.org/10.1126/science.1229386" target="_blank">10.1126/science.1229386</a>;
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23430654" target="_blank">23430654</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974810/" target="_blank">PMC3974810</a>
 </p>