9cedfa38c14068c79dec89f76c606ee22b3f931a
max
  Wed Sep 30 15:02:37 2026 -0700
phasedVars: new subtrack hgdp1kSnv, a 17GB version of the 3.5TB gnomAD HGDP+1000G genotype VCF with only SNVs with AC>5 and only GT, so haplotype clustering can be shown up to 5Mbp, refs #37306

diff --git src/hg/makeDb/trackDb/human/phasedVars.ra src/hg/makeDb/trackDb/human/phasedVars.ra
index 8ee60ac4909..9da95cd6d6b 100644
--- src/hg/makeDb/trackDb/human/phasedVars.ra
+++ src/hg/makeDb/trackDb/human/phasedVars.ra
@@ -40,30 +40,44 @@
         dataVersion 2016-12-07 public (hg38 lift)
         priority 4
         html phasedVars.html
 
         track hgdp1k
         shortLabel gnomAD HGDP+1000G 4k WGS
         longLabel Phased Variants: gnomAD HGDP + 1000 genomes callset - 4094 whole genomes, 80 populations
         type vcfTabix
         parent phasedVars on
         bigDataUrl /gbdb/$D/phasedVars/hgdp1k/gnomad.genomes.v3.1.2.hgdp_tgp.vcf.gz
         visibility pack
         dataVersion v 3.1.2
         priority 5
         html phasedVars.html
 
+        track hgdp1kSnv
+        shortLabel gnomAD HGDP+1000G SNVs AC>5
+        longLabel Phased Variants: gnomAD HGDP + 1000 genomes callset - SNVs with allele count > 5 only, faster display
+        type vcfTabix
+        parent phasedVars
+        bigDataUrl /gbdb/$D/phasedVars/hgdp1k/hgdp1k.snvAc6.vcf.gz
+        maxWindowToDraw 5000000
+        maxItems 200000
+        visibility pack
+        dataVersion v 3.1.2
+        release alpha
+        priority 6
+        html phasedVars.html
+
         track han945SvVcf
         parent phasedVars
         bigDataUrl /gbdb/$D/phasedVars/han945genotypes.vcf.gz
         shortLabel SVs from 945 Han Chinese
         longLabel Phased Variants: Structural variants from 945 Han Chinese SVs
         type vcfTabix
         visibility dense
         release alpha
         priority 10
 
         track lrSv1kgOntPhased
         parent phasedVars
         bigDataUrl /gbdb/$D/phasedVars/1kgOntPhased.vcf.gz
         shortLabel SVs from 1000G ONT
         longLabel Phased Variants: Structural variants from 1,019 diverse humans (1000 Genomes Vienna ONT, shapeit5)