f03f56cd3c795a6fba2b8419662a9a2c5d49f69a max Sat Sep 26 14:16:17 2026 -0700 sfariSparkWgs45kAsd: now genome-wide (518M variants from the 45,178 genotype pVCFs, run on parasol); per-allele INFO fields declared Number=1 so the VCF track filters accept them, doc page no longer says DSCAM only, refs #38424 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 54e16c8ee5c..b51381bd322 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -1384,37 +1384,34 @@ priority 24.1 html sfariSparkExomes tableBrowser off filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele frequency, all filter.AF_AUT 0:1 filterByRange.AF_AUT on filterLimits.AF_AUT 0:1 filterLabel.AF_AUT Allele frequency, autistic filter.AF_NON_AUT 0:1 filterByRange.AF_NON_AUT on filterLimits.AF_NON_AUT 0:1 filterLabel.AF_NON_AUT Allele frequency, non-autistic - filter.VARLEN -1000:1000 + filter.VARLEN -400:1100 filterByRange.VARLEN on - filterLimits.VARLEN -1000:1000 + filterLimits.VARLEN -400:1100 filterLabel.VARLEN Length change in bp (ALT minus REF, negative for deletions) - filterText.BCSQ * - filterType.BCSQ wildcard - filterLabel.BCSQ Predicted consequence (e.g. *missense*, *frameshift*, *stop_gained*) #track mcps #shortLabel Mexico City Prospective Study 10k WGS+141k WES #longLabel SNV Frequencies: Mexico City Prospective Study (MCPS) #tableBrowser off #parent varFreqs on #bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz #visibility pack #type vcfTabix #dataVersion May 2023 (v1.2.0) #priority 3 track tommo60kjpn shortLabel Japan ToMMo 61k WGS longLabel SNV Frequencies: Japan 61k - ToMMo SNV+Indels