c9d17a52b6b5663c7175b01f801d23198b675f7e
max
  Fri Sep 25 12:03:55 2026 -0700
Revert all bigBed-filters for VCF changes, as Chris did that earlier already.

This reverts commit 2521d696f5073ce8cee3f59f423f161fdb77d550.

diff --git src/hg/inc/vcfUi.h src/hg/inc/vcfUi.h
index 757c2e547a6..f19e1554fd6 100644
--- src/hg/inc/vcfUi.h
+++ src/hg/inc/vcfUi.h
@@ -1,96 +1,90 @@
 /* vcfUi - Variant Call Format user interface controls that are shared
  * between more than one CGI. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #ifndef VCFUI_H
 #define VCFUI_H
 
 #include "cart.h"
 #include "trackDb.h"
 #include "vcf.h"
 
 #define VCF_HAP_HEIGHT_VAR "hapClusterHeight"
 #define VCF_DEFAULT_HAP_HEIGHT 128
 
 #define VCF_HAP_ENABLED_VAR "hapClusterEnabled"
 #define VCF_HAP_METHOD_VAR "hapClusterMethod"
 #define VCF_HAP_METHOD_CENTER_WEIGHTED "centerWeighted"
 #define VCF_HAP_METHOD_FILE_ORDER "fileOrder"
 #define VCF_HAP_METHOD_TREE_FILE "treeFile"
 #define VCF_DEFAULT_HAP_METHOD VCF_HAP_METHOD_CENTER_WEIGHTED
 
 #define VCF_HAP_COLORBY_VAR "hapClusterColorBy"
 #define VCF_HAP_COLORBY_ALTONLY "altOnly"
 #define VCF_HAP_COLORBY_FUNCTION "function"
 #define VCF_HAP_COLORBY_REFALT "refAlt"
 #define VCF_HAP_COLORBY_BASE "base"
 #define VCF_DEFAULT_HAP_COLORBY VCF_HAP_COLORBY_ALTONLY
 
 #define VCF_HAP_TREEANGLE_VAR "hapClusterTreeAngle"
 #define VCF_HAP_TREEANGLE_TRIANGLE "triangle"
 #define VCF_HAP_TREEANGLE_RECTANGLE "rectangle"
 #define VCF_DEFAULT_HAP_TREEANGLE VCF_HAP_TREEANGLE_TRIANGLE
 
 #define VCF_SAMPLE_COLOR_FILE "sampleColorFile"
 #define VCF_SAMPLE_METADATA_FILE "sampleMetadataFile"
 
 #define VCF_SHOW_HW_VAR "showHardyWeinberg"
 
 #define VCF_APPLY_MIN_QUAL_VAR "applyMinQual"
 #define VCF_DEFAULT_APPLY_MIN_QUAL FALSE
 
 #define VCF_DO_QUAL_UI "vcfDoQual"
 #define VCF_MIN_QUAL_VAR "minQual"
 #define VCF_DEFAULT_MIN_QUAL 0
 
 #define VCF_DO_FILTER_UI "vcfDoFilter"
 
 #define VCF_EXCLUDE_FILTER_VAR "excludeFilterValues"
 
 #define VCF_DO_MAF_UI "vcfDoMaf"
 #define VCF_MIN_ALLELE_FREQ_VAR "minFreq"
 #define VCF_DEFAULT_MIN_ALLELE_FREQ 0.0
 
 #define VCF_DO_MIN_AC_UI "vcfDoMinAc"
 #define VCF_MIN_AC_VAR "minAc"
 #define VCF_DEFAULT_MIN_AC 0
 
 #define VCF_PHASED_CHILD_SAMPLE_SETTING "vcfChildSample"
 #define VCF_PHASED_PARENTS_SAMPLE_SETTING "vcfParentSamples"
 #define VCF_PHASED_SAMPLE_ORDER_VAR "vcfSampleOrder"
 #define VCF_PHASED_MAX_OTHER_SAMPLES 2
 #define VCF_PHASED_DEFAULT_LABEL_VAR "doDefaultLabel"
 #define VCF_PHASED_ALIAS_LABEL_VAR "doAliasLabel"
 #define VCF_PHASED_HIDE_OTHER_VAR "hideParents"
 #define VCF_PHASED_TDB_USE_ALT_NAMES "vcfUseAltSampleNames"
 #define VCF_PHASED_CHILD_BELOW_VAR "sortChildBelow"
 
 #define VCF_PHASED_COLORBY_VAR "vcfPhasedColorBy"
 #define VCF_PHASED_COLORBY_MENDEL_DIFF "mendelDiff"
 #define VCF_PHASED_COLORBY_DE_NOVO "deNovo"
 #define VCF_PHASED_COLORBY_FUNCTION "function"
 #define VCF_PHASED_COLORBY_DEFAULT "noColor"
 
 void vcfCfgHaplotypeCenter(struct cart *cart, struct trackDb *tdb, char *track,
 			   boolean parentLevel, struct vcfFile *vcff,
 			   char *thisName, char *thisChrom, int thisPos, char *formName);
 /* If vcff has genotype data, show status and controls for choosing the center variant
  * for haplotype clustering/sorting in hgTracks. */
 
 struct slPair *vcfPhasedGetSampleOrder(struct cart *cart, struct trackDb *tdb, boolean parentLevel, boolean hideOtherSamples);
 /* Parse out a trio sample order from trackDb */
 
 void vcfCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed);
 /* Complete track controls for VCF. */
 
 char *vcfHaplotypeOrSample(struct cart *cart);
 /* Return "Sample" if the current organism is uniploid (like SARS-CoV-2), "Haplotype" otherwise. */
 
-struct asObject *vcfInfoAsObj(struct cart *cart, struct trackDb *tdb);
-/* Return a pseudo-autoSql object that describes the fields of a VCF track that can be used by the
- * generic trackDb filters (filter.*, filterText.*, filterValues.* etc): one column per INFO
- * definition in the VCF header, named by the INFO key, with the header's Description as comment,
- * followed by the fixed columns ID and QUAL.  Returns NULL if the file cannot be opened. */
-
 #endif//def VCF_UI