09360ed5d9de0f031b6f62924852b533c8fda23a mspeir Sat Sep 26 18:45:33 2026 -0700 Fixing typo in zip name, no refs diff --git src/hg/htdocs/FAQ/FAQblat.html src/hg/htdocs/FAQ/FAQblat.html index c9f5fd74f9a..836a4897d46 100755 --- src/hg/htdocs/FAQ/FAQblat.html +++ src/hg/htdocs/FAQ/FAQblat.html @@ -142,31 +142,31 @@ sequences or less.
For users with high-volume Blat demands, we recommend downloading the BLAT tool for local use. For more information, see Downloading BLAT source and documentation.
BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the Kent Informatics website.
BLAT source may be downloaded from http://hgdownload.gi.ucsc.edu/admin/ (located -at /kent/src/blat within the most recent jksrci*.zip source tree). For BLAT executables, go to +at /kent/src/blat within the most recent jksrc*.zip source tree). For BLAT executables, go to http://hgdownload.gi.ucsc.edu/admin/exe/ and choose your machine type.
Documentation on BLAT program specifications is available here. Note that the command-line BLAT does not return matches to U nucleotides in the query sequence.
We almost always expect small differences between the hgBLAT/gfServer and the stand-alone, command-line Blat. The best matches can be found using pslReps and pslCDnaFilter utilities. The web-based Blat is tuned permissively with a minimum cut-off score of 20, which will