795eb665503d576544d47e863b6a4d30df48b568 mspeir Sat Sep 26 18:48:11 2026 -0700 point three help pages at public hosts instead of genome-test, refs #37641 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index c5d8dde2b0d..a56910d8e80 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -946,35 +946,36 @@ <h3>Creating a custom annotation track from BLAT output</h3> <p> To make a custom track directly from BLAT, select the <a href="../../FAQ/FAQformat.html#format2">PSL format</a> output option. The resulting PSL track can be uploaded into the Genome Browser by pasting the data into the data text box on the Genome Browser <a href="../../cgi-bin/hgCustom?">Add Custom Tracks</a> page, accessed via the "add custom tracks" button on the Browser gateway and annotation tracks pages. See the <a href="#CustomTracks">Creating custom annotation tracks</a> section for more information.</p> <h3>Using BLAT for large batch jobs or commercial use</h3> <p> For large batch jobs or internal parameter changes, it is best to install command line BLAT on your own Linux server. Sources and executables are free for academic, personal, and non-profit purposes. -BLAT source may be downloaded from <a href="https://genome-test.gi.ucsc.edu/~kent/src/" -target="_blank">https://genome-test.gi.ucsc.edu/~kent/src/</a> -(look for the <em>blatSrc*.zip</em> file with the -most recent date). For BLAT executables, go to <a href="http://genome-test.soe.ucsc.edu/~kent/exe/" -target="_blank">http://genome-test.soe.ucsc.edu/~kent/exe/</a>; binaries are sorted by platform. +BLAT source may be downloaded from <a href="https://hgdownload.gi.ucsc.edu/admin/" +target="_blank">https://hgdownload.gi.ucsc.edu/admin/</a> +(located at <em>kent/src/blat</em> within the most recent +<em>jksrc*.zip</em> source tree). For BLAT executables, go to +<a href="https://hgdownload.gi.ucsc.edu/admin/exe/" +target="_blank">https://hgdownload.gi.ucsc.edu/admin/exe/</a>; binaries are sorted by platform. Non-exclusive commercial licenses are available from the <a href="http://www.kentinformatics.com/" target="_blank">Kent Informatics</a> website.</p> <h3>BLAT documentation</h3> <p> For more information on the BLAT suite of programs, see the <a href="blatSpec.html">BLAT Program Specifications</a> and the <a href="../../FAQ/FAQblat.html">Blat section</a> of the Genome Browser FAQ.</p> <a name="IndivTracks"></a> <h2>Annotation track descriptions</h2> <p> Detailed information about an individual annotation track, including display characteristics, configuration information, and associated database tables, may be obtained from the track description page accessed by clicking the mini-button to the left of the displayed track in the