a8900aeeb2ac10fba9a4c772f270d15c54279b87
mspeir
  Sat Sep 26 18:55:12 2026 -0700
rewrite the example assembly hub sections around GenArk instead of genome-test, refs #37641

diff --git src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
index fc63fb7ec17..d2937639627 100755
--- src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
+++ src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html
@@ -57,33 +57,35 @@
 displays: <pre><code>curl -I http://yourURL/hub.txt</code></pre></p>
 <p>
 Now that you have the assembly hub copied from above, you can copy the directory and start to edit 
 some of the documents such as genomes.txt, groups.txt, and trackDb.txt to understand how they work. 
 Refer to the <a href="assemblyHubHelp.html" target="_blank">Assembly Hub User Guide</a> to
 understand how to build a <a href="twoBit.html" target="_blank">twoBit</a> file for
 your own original fasta files. Read more about <a href="trackDb/trackDbHub.html"
 target="_blank">trackDb settings</a> in the definition document.</p>
 <p>
 Assembly hubs also support <a href="assemblyHubHelp.html#chromAlias"
 target="_blank">chromAlias and chromAuthority</a>, which let the Browser map chromosome names
 across different naming schemes and display a preferred convention. A default naming scheme can be
 set using the <code>chromAuthority</code> setting.
 </p>
 <p>
-This assembly hub is an abbreviated version of a larger plant assembly Public Hub.  You can 
-explore the larger hub structure <a href="http://genome-test.soe.ucsc.edu/~hiram/hubs/Plants/" 
-target="_blank">here</a>.</p>
+This assembly hub is an abbreviated version of a much larger collection of plant assembly hubs.
+You can explore that collection in the
+<a href="https://hgdownload.gi.ucsc.edu/hubs/plants/index.html" target="_blank">GenArk plant
+genomes index</a>, which carries several <em>Arabidopsis thaliana</em> assemblies alongside
+hundreds of other plants.</p>
 <p>
 Please note that the Browser waits 5 minutes before checking for any changes to these files. 
 <strong>When editing hub.txt, genomes.txt, trackDb.txt, and related hub files, shorten this delay by
 adding <code>udcTimeout=1</code> to your URL.</strong> For more information, please see the 
 <a href="hgTrackHubHelp.html#Debug" target="_blank">Debugging and Updating Track Hubs</a> section of
 the <a href="hgTrackHubHelp.html" target="_blank">Track Hub User Guide</a>. Also, for more detailed 
 instructions on setting up a regular hub, please see the <a href="hgTrackHubHelp.html#Setup" 
 target="_blank">Setting Up Your Own Track Hub</a> section of the Track Hub User Guide.</p> 
 
 <h2>Setting up Blat and In-Silico PCR for an Assembly Hub</h2>
 <p>
 By running gfServers from your institution, you can enable blat on your assembly hubs. See
 <a href="#blat">Starting Blat and In-Silico PCR for an Assembly Hub</a> for details.</p>
 
 <h2>Setting up an Assembly Hub on GBiB with Blat and In-Silico PCR included</h2>