fa272dac584b8d450211f426b50c5e9e6de114c8 mspeir Tue Sep 22 08:40:34 2026 -0700 New FAQ page on regulation and cis-regulatory tracks, refs #24610 Adds FAQ/FAQregulation.html, the page requested in this ticket since 2019: where to find transcription factor binding site data, and how the various cis-regulatory tracks relate to each other. The page is organized around the measured vs predicted distinction, which is what most of the mailing list questions turn on, and then covers which TFBS tracks to use, what to do when a factor is in none of them, loading ENCODE portal data through the portal's own Visualize button, promoters, enhancers, cCREs, restricting to a cell type, and working outward from a gene. It ends with a summary table of 16 tracks. Assembly coverage is given per track and every assembly name is a link to that track's description page on that assembly, since coverage varies a lot (mm39 carries only three of these tracks, and TFBS Conserved was never built for hg38). Also adds the category to FAQ/index.html and a cross-link from the promoter sequence question in FAQ/FAQdownloads.html. Co-Authored-By: Claude Opus 5 (1M context) diff --git src/hg/htdocs/FAQ/index.html src/hg/htdocs/FAQ/index.html index 26b8dd2bfb9..71504d53f73 100755 --- src/hg/htdocs/FAQ/index.html +++ src/hg/htdocs/FAQ/index.html @@ -1,117 +1,118 @@

Genome Browser FAQ

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