3e922f07e4d8c51a3b989e3dc6748e33f8516e3b
braney
  Mon Jun 22 09:10:05 2026 -0700
Document two -O3 cleanup details raised in v500 code review

Follow-up to code review #37767, addressing two points on commit f57fc11d951:

- The else guards in sanger22gtf.c and bottleneck.c looked like leftovers from
before errAbort was marked noreturn, but they are still required: removing
either one reintroduces -Werror=format-overflow at -O3, because that warning
runs before the noreturn-based dead-path pruning.  Added a comment at each
else saying so.

- makeGrayShades (hgGene/altSplice.c and hgTracks/simpleTracks.c) writes
shadesOfGray[maxShade+1] = MG_RED as an overflow sentinel.  Spelled this out
in both function descriptions so the maxShade+2 array sizing is documented at
the function, not just at the caller.

Comment-only; no behavior change.

refs #37767 refs #37761

diff --git src/weblet/bottleneck/bottleneck.c src/weblet/bottleneck/bottleneck.c
index b1b89cdbce3..102269e352c 100644
--- src/weblet/bottleneck/bottleneck.c
+++ src/weblet/bottleneck/bottleneck.c
@@ -1,311 +1,311 @@
 /* bottleneck - A server that helps slow down hyperactive web robots. */
 #include "common.h"
 #include <sys/wait.h>
 #include "localmem.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "portable.h"
 #include "internet.h"
 #include "net.h"
 
 
 int port = 17776;	/* Default bottleneck port. */
 char *host = "localhost";   /* Default host. */
 int penalty = 75;	    /* Penalty in milliseconds per access. */
 int recovery = 10;	    /* Recovery in milliseconds per second. */
 struct cidr *subnet = NULL;        /* Subnet as CIDR struct. */
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "bottleneck v2 - A server that helps slow down hyperactive web robots\n"
   "usage:\n"
   "   bottleneck start\n"
   "Start up bottleneck server\n"
   "   bottleneck query ip-address [count] [fraction]\n"
   "Ask bottleneck server how long to wait to service ip-address after imposing\n"
   "the specified fraction of the access penalty (default of 1.0)\n"
   "   bottleneck list\n"
   "List accessing sites\n"
   "   bottleneck set ip-address milliseconds\n"
   "Set current delay for given ip-address\n"
   "options:\n"
   "   -port=XXXX - Use specific tcp/ip port. Default %d.\n"
   "   -host=XXXXX - Use specific host.  Default %s.\n"
   "   -subnet=WWW.XXX.YYY.ZZZ Restrict access to subnet (example 192.168.255.255).\n"
   "      Supports comma-separated list of IPv4 or IPv6 subnets in CIDR notation, for example 192.168.255.255/16\n"
   "   -penalty=N - Penalty (in milliseconds) for each access, default %d\n"
   "   -recovery=N - Amount to recover (in milliseconds) for each second\n"
   "                 between accesses.  Default %d\n"
   "Note: penalty and recovery if moved from defaults should balance\n"
   "At the default settings, an equilibrium will be achieved when queries\n"
   "are spaced 7.5 seconds apart.  At the default decay value, an accumulated\n"
   "delay of 15 seconds will take 25 minutes of idleness to decay back to zero.\n"
   , port, host, penalty, recovery
   );
 }
 
 static struct optionSpec options[] = {
    {"port", OPTION_INT},
    {"host", OPTION_STRING},
    {"subnet", OPTION_STRING},
    {"penalty", OPTION_INT},
    {"recovery", OPTION_INT},
    {NULL, 0},
 };
 
 struct tracker
 /* Keep track of IP addresses. */
     {
     struct tracker *next;	/* Next in list. */
     char *name;	/* Name (IP address).  Not allocated here. */
     time_t lastAccess;		/* Time of last access. */
     int curDelay;		/* Current delay in 1000ths of second. */
     int maxDelay;		/* Maximum delay so far. */
     int accessCount;		/* Total number of accesses since started tracking. */
     };
 
 struct hash *trackerHash = NULL;	/* Hash of all trackers. */
 struct tracker *trackerList;		/* List of all trackers. */
 time_t now;				/* Current time. */
 
 struct tracker *trackerForIp(char *ip)
 /* Find tracker for given IP address.  Make it up if it
  * doesn't already exist. */
 {
 struct tracker *tracker = hashFindVal(trackerHash, ip);
 if (tracker == NULL)
     {
     lmAllocVar(trackerHash->lm, tracker);
     hashAddSaveName(trackerHash, ip, tracker, &tracker->name);
     tracker->lastAccess = now;
     tracker->curDelay = -penalty;
     slAddHead(&trackerList, tracker);
     }
 return tracker;
 }
 
 int calcDelay(struct tracker *tracker, double fraction)
 /* Figure out recommended delay. */
 {
 int timeDiff = now - tracker->lastAccess;
 int delay;
 if (timeDiff < 0)
     timeDiff = 0;
 delay = tracker->curDelay + (int)(fraction*penalty) - timeDiff*recovery;
 if (delay < 0)
     delay = 0;
 return delay;
 }
 
 void returnList(int socket)
 /* Send list of all things tracked down socket. */
 {
 struct tracker *tracker;
 char buf[256];
 int timeDiff;
 safef(buf, sizeof(buf), "#IP_ADDRESS\thits\ttime\tmax\tcurrent");
 netSendString(socket, buf);
 for (tracker = trackerList; tracker != NULL; tracker = tracker->next)
     {
     timeDiff = now - tracker->lastAccess;
     safef(buf, sizeof(buf), "%s\t%d\t%d\t%d\t%d", 
     	tracker->name, tracker->accessCount, timeDiff, 
 	tracker->maxDelay, calcDelay(tracker, 1.0));
     if (!netSendString(socket, buf))
         break;
     }
 netSendString(socket, "");
 }
 
 void clearZombies()
 /* Clear any zombie processes */
 {
 int stat;
 for (;;)
     {
     if (waitpid(-1, &stat, WNOHANG) <= 0)
 	break;
     }
 }
 
 void forkOutList(int socket)
 /* Fork instance of self to send list of all things tracked
  * down socket. */
 {
 if (fork() == 0)
     {
     returnList(socket);
     exit(0);
     }
 else
     {
     clearZombies();
     }
 }
 
 void startServer()
 /* Start up bottleneck server. */
 {
 int acceptor;
 subnet = internetParseSubnetCidr(optionVal("subnet", NULL));
 trackerHash = newHash(18);
 acceptor = netAcceptingSocket(port, 64);
 for (;;)
     {
     struct tracker *tracker;
     int socket = netAcceptFrom(acceptor, subnet);
     char buf[256], *s;
     s = netGetString(socket, buf);
     if (s != NULL)
 	{
 	now = time(NULL);
 	if (s[0] == '?')
 	    {
 	    if (s[1] == 0)
 		forkOutList(socket);
 	    else
 	        {
 		char *command = nextWord(&s);
 		if (sameString(command, "?set"))
 		    {
 		    char *ip = nextWord(&s);
 		    char *millis = nextWord(&s);
 		    if (millis != NULL)
 		        {
 			tracker = trackerForIp(ip);
 			tracker->curDelay = atoi(millis) - penalty;
 			tracker->lastAccess = now;
 			}
 		    }
 		}
 	    }
 	else
 	    {
 	    char *ip = nextWord(&s);
 	    char *fraction = nextWord(&s);
 	    tracker = trackerForIp(ip);
 	    tracker->accessCount += 1;
 	    if (fraction != NULL)
 		tracker->curDelay = calcDelay(tracker, atof(fraction));
 	    else
 		tracker->curDelay = calcDelay(tracker, 1.0);
 	    if (tracker->maxDelay < tracker->curDelay)
 	        tracker->maxDelay = tracker->curDelay;
 	    tracker->lastAccess = now;
 	    safef(buf, sizeof(buf), "%d", tracker->curDelay);
 	    netSendString(socket, buf);
 	    }
 	}
     close(socket);
     }
 }
 
 void forkOffServer()
 /* Close standard file handles and fork to be a better daemon. */
 {
 /* Close standard file handles. */
 close(0);
 close(1);
 close(2);
 
 if (fork() == 0)
     {
     /* Execute daemon. */
     startServer();
     }
 }
 
 void queryServer(char *ip, int count, double fraction)
 /* Query bottleneck server - just for testing.
  * Main query is over ip port. */
 {
 int i;
 char sendString[256];
 safef(sendString, sizeof(sendString), "%s %f", ip, fraction);
 for (i=0; i<count; ++i)
     {
     int socket = netMustConnect(host, port);
     char buf[256], *s;
     netSendString(socket, sendString);
     s = netGetString(socket, buf);
     if (s == NULL)
         errAbort("Shut out by bottleneck server %s:%d", host, port);
-    else
+    else // guard printf: -Wformat-overflow runs before errAbort's noreturn prunes the null path
         printf("%s millisecond delay recommended\n", s);
     close(socket);
     }
 }
 
 void setUser(char *ip, char *millis)
 /* Set user current delay. */
 {
 int socket = netMustConnect(host, port);
 char buf[256];
 safef(buf, sizeof(buf), "?set %s %s", ip, millis);
 netSendString(socket, buf);
 close(socket);
 }
 
 void listAll()
 /* Ask server for info on all IP addresses. */
 {
 int socket = netMustConnect(host, port);
 char buf[256], *s;
 netSendString(socket, "?");
 for (;;)
     {
     s = netGetString(socket, buf);
     if (s == NULL || s[0] == 0)
         break;
     printf("%s\n", buf);
     }
 close(socket);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 char *command;
 optionInit(&argc, argv, options);
 if (argc < 2)
     usage();
 port = optionInt("port", port);
 host = optionVal("host", host);
 penalty = optionInt("penalty", penalty);
 recovery = optionInt("recovery", recovery);
 command = argv[1];
 if (sameString(command, "start"))
     {
     if (argc != 2)
         usage();
     forkOffServer();
     }
 else if (sameString(command, "query"))
     {
     int count = 1;
     if (argc > 3)
 	count = atoi(argv[3]);
     double fraction = 1.0;
     if (argc > 4)
     fraction = atof(argv[4]);
     queryServer(argv[2], count, fraction);
     }
 else if (sameString(command, "list"))
     {
     listAll();
     }
 else if (sameString(command, "set"))
     {
     if (argc != 4)
         usage();
     setUser(argv[2], argv[3]);
     }
 else
     {
     usage();
     }
 return 0;
 }