373e06aadc70142ac8221261992b2815a343cf1d
brianlee
  Wed Dec 10 14:23:46 2025 -0800
Adding RM references to ADGCs on timeline

diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
index 16266ba5c42..5082cfcde18 100755
--- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
+++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
@@ -15,31 +15,31 @@
 </head>
 
 <div class="cirm-page-body">
   <div class="cirm-page-title back-dark-pink">
     <h5 class="cirm-page-title-text">SSPsyGene Milestone Charts</h5>
   </div>
   <a name="ADGC1"></a>
   <!-- Start of ADGC1 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC1 UCLA Chart</h5></div>
   <div class="row">
     <div class="col-md-12">
     <pre class="mermaid">
     gantt
     dateFormat  YYYY-MM-DD
     axisFormat  %Y-Q%q
-    title       ADGC1  UCLA
+    title       ADGC1  UCLA  [RM1MH132651]
 
 
     section Grant Year                                                                           
     Start Grant Year 2     :milestone, m1, 2024-03-31, 0d                                       
     Start Grant Year 3     :milestone, year3_ucla, 2025-03-31, 0d                                       
     Start Grant Year 4     :milestone, m1, 2026-03-31, 0d                                        
     Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
     click year3_ucla href "https://docs.google.com/spreadsheets/d/1Ml_UXDHE4UZo2kjLp1aZLa0KxLtLSnVi/edit?gid=1138387919#gid=1138387919&range=J1:M20"
         
     section AIM 1 
     Generate stable clonal iPSC lines for additional 25 gene mutations in KOLF2.2J and CIRM (BATCH B)    :        t3, 2024-04-01, 2024-09-30
     QC of Capstone  lines to date pending    : t4, 2024-04-01, 39w
     Generate and QC stable clonal iPSC lines for additional 65 gene mutations in KOLF2.2J and CIRM   :    t6, after t3, 52w
     QC of all generated lines to date pending   :   t7, after t3, 78w
@@ -98,31 +98,31 @@
     Perform snRNAseq for future batches   : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d
     Organoid snRNAseq Analysis for future batches   : crit, milestone, ADGC1_Q_1920, 2027-04-01, 0d
     
     </pre>
     </div>
   </div>
   <a name="ADGC2"></a>
   <!-- Start of ADGC2 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC2 MiNND timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC2  MiNND
+        title       ADGC2  MiNND [RM1MH133065]
 
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_minnd, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         click year3_minnd href "https://docs.google.com/spreadsheets/d/1GNrJaIjs6nPlFY4j2AlZSlTDf2-mi17d/edit?gid=1137576441#gid=1137576441&range=J1:M34"
         
         section Aim 1
         Generated 217 new lines including 10 NTC (total 332 lines). We generated iNs from 180 lines.  :done, IIt1, 2024-04-01, 2025-04-01
         Production of 72 iPSC lines on average per quarter (3 batches of 23 gene mutations + 1 NTC) :   IIt2, after IIt1,13w
         Production of 72 iPSC lines on average per quarter (3 batches of 23 gene mutations + 1 NTC) :   IIt3, after IIt2,13w
         Production of 72 iPSC lines on average per quarter (3 batches of 23 gene mutations + 1 NTC) :   IIt4, after IIt3,13w
         Production of 72 iPSC lines on average per quarter (3 batches of 23 gene mutations + 1 NTC) :   IIt5, after IIt4,13w
@@ -153,31 +153,31 @@
         section Aim4
         Submit PatchSeq data for 192 NTC lines L0 data :crit, IIv20, 2025-04-01,52w
         Submit PatchSeq data for 192 cells L1-L3 : crit, IIv21, 2025-07-01,39w
       </pre>
     </div>
   </div>
   <a name="ADGC3"></a>
   <!-- Start of ADGC3 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC3 Yale timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC3  Yale
+        title       ADGC3  Yale [RM1MH132648]
 
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_yale, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         click year3_yale href "https://docs.google.com/spreadsheets/d/10xWymZXsDlDQ9uwU5YPAKwyflUMzpDS4/edit?gid=1305684354#gid=1305684354&range=J1:M25"
 
         section Aim 1
         Generate NPC lines from KOLF2.2J and CW20107 for 10 ASD genes : done, IIIt2, 2024-04-01,26w
         SUSPENDED - ECCITEseq in hiPSC-NPCs of 10 ASD genes scRNA-seq profiles : active,  IIIt3, after IIIt2,13w
         SUSPENDED - Sequence and analysis poooled CRISPR screen of 10 NPD genes in hiPSC-NPCs : active, IIIt5, after IIIt3,13w
         SUSPENDED - Submit data from multi-omic CRISPR screen of NPD genes in NPCs :active, IIIt8, after IIIt5, 13w
         ECCITEseq in day 21 iGLUTs of 10 ASD genes scRNA-seq profiles : done, IIIt4, after IIIt3,13w
@@ -235,31 +235,31 @@
         Submit data (L0, L1) CRISPRi organoid transcriptomic and epigenomic analysis 5-10 DBiT RNA-seq profiles and DBiT ATAC-seq profiles, CHD8 : crit, milestone, ADGC3_M_23, 2026-03-31, 0d
         Submit data (L0, L1) CRISPRi organoid transcriptomic and epigenomic analysis 10-20 DBiT RNA-seq and DBiT ATAC-seq, two TBD genes  : crit, milestone, ADGC3_N_23, 2027-04-01, 0d
         
       </pre>
     </div>
   </div>
   <a name="ADGC4"></a>
   <!-- Start of ADGC4 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC4 Broad timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC4  Broad
+        title       ADGC4  Broad [R01MH128366]
 
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, year3_broad, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         click year3_broad href "https://docs.google.com/spreadsheets/d/1BwaO6rgn0o5nTulC2M6dQe5UMGUWEy-o/edit?gid=2037309850#gid=2037309850&range=D1:D16"
 
         section Aim 1
         Perform perturb-seq screen of 150 genes in 4 cell types : IVt2, 2024-04-01,52w
         Submit 100,000 scRNA-seq profiles per cell type (fastq) - PARTIALLY COMPLETE (191 GENES, 3 CELL TYPES)/ TRANSFER STARTED : crit, IVt2b, after IVt2,3w
         Submit 100,000 scRNA-seq profiles per cell type (fastq) of 191 genes in 3 cell types : crit, milestone, ADGC4_Aim1_year4_item1, 2026-03-31, 0d
         Develop protocol for scaling up screen size : done, IVt5, 2024-04-01,52w
         Validation of initial 20 gene morphological screen : done, IVt3, 2024-04-01,52w
@@ -286,31 +286,31 @@
         Submit 10 TB of associated images to DRACC : crit, milestone, ADGC4_Aim3_year4_item2, 2026-03-31, 0d
         Submit remaining morphology imaging : crit, milestone, ADGC4_Aim3_year5_item2, 2027-03-31, 0d
 
       </pre>
     </div>
   </div>
     <a name="ADGC5"></a>
     <!-- Start of ADGC5 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC5 Scripps/Broad timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC5  Scripps/Broad
+        title       ADGC5  Scripps/Broad [R01MH137042-01/-02]
  
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         section Scripps/Broad Reporting Year
         End Scripps/Broad Reporting Year 1     :milestone, year1_scripps, 2025-03-31, 0d
         End Scripps/Broad Reporting Year 2      :milestone, m1, 2026-03-31, 0d
         End Scripps/Broad Reporting Year 3      :milestone, m1, 2027-04-01, 0d
 
         click year1_scripps href "https://docs.google.com/spreadsheets/d/19RWN6-DjIyMpFV2JP4yY5Ta5Xfthieds/edit?gid=744607405#gid=744607405&range=C2:C15"
         
         section Aim 1
@@ -334,31 +334,31 @@
         Develop methods for GRN analysis of multiomics data :  V_Y2t5, 2025-04-01,52w
         Identify datasets to be used to build GRNs from developing human brains :  V_Y2t6, 2025-04-01,52w
         Generate raw TIFF format and 3D swc files for 100 neurons on 3 genes  :  V_Y2t7, 2025-04-01,52w
       </pre>
     </div>
   </div>
       <a name="ADGC6"></a>
     <!-- Start of ADGC6 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC6 SING Timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC6  Cross-Scale Interrogation of NPD Genes (SING) - PSU/JAX/UTSW/NYU 
+        title       ADGC6  Cross-Scale Interrogation of NPD Genes (SING) - PSU/JAX/UTSW/NYU [RM1MH138309]
 
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         section SING Reporting Year
         End SING Reporting Year 1      :milestone, year1_SING, 2025-12-31, 0d
         End SING Reporting Year 2      :milestone, m1, 2026-12-31, 0d
 
         click year1_SING href "https://docs.google.com/spreadsheets/d/1pw1muwglklo-gXrC5hadYjSqBjhZOKeh/edit?gid=1827916005#gid=1827916005&range=C2:E23"
 
         section Aim 1
         Initial discussion with DRACC for data transfer complete : crit, milestone, ADGC6_C_7, 2025-06-30, 0d
@@ -378,31 +378,31 @@
         DRACC data transfer of C57 control behavioral data : crit, milestone, ADGC6_D_23, 2025-09-30, 0d
         DRACC data transfer of first 5 KO lines behavioral data : crit, milestone, ADGC6_E_23, 2026-01-01, 0d
         DRACC data transfer of 2025 Q4 and 20026 Q1-Q3 KO line behavioral data : crit, milestone, ADGC6_F_23, 2027-01-01, 0d
       </pre>
     </div>
   </div>
 
       <!-- Start of ADGC7 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC7 WUSTL Timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
-        title       ADGC7  Washington Univ. St Louis - WUSTL
+        title       ADGC7  Washington Univ. St Louis - WUSTL [RM1MH138313]
 
         section Grant Year
         Start Grant Year 2     :milestone, m1, 2024-03-31, 0d
         Start Grant Year 3     :milestone, m1, 2025-03-31, 0d
         Start Grant Year 4     :milestone, m1, 2026-03-31, 0d
         Start Grant Year 5     :milestone, m1, 2027-04-01, 0d
 
         section WUSTL Reporting Year
         End WUSTL Reporting Year 1      :milestone, year1_wustl, 2025-12-31, 0d
         End WUSTL Reporting Year 2      :milestone, m1, 2026-12-31, 0d
 
         click year1_wustl href "https://docs.google.com/spreadsheets/d/1ae4bX4Ful2AWlqzeH_JOo4jFssmEsojd/edit?gid=1888128068#gid=1888128068&range=C2:E27"
 
         section Aim 1
         L0, L1 Data from last quarter submitted, and 3 more lines collected : crit, milestone, ADGC7_E_12, 2025-12-31, 0d