Commits for galt
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v492_preview2 to v492_base (2025-12-08 to 2025-12-15) v492
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091a7e46fe5e9397ec47ba8aa026a8d400040714 Mon Dec 8 10:08:44 2025 -0800
- Fixes hgTables Sequence output with CDS casing. Bug caused introns to be upper case and has existed since 2002. fixes #34381
a02093ad8adb1d4e964ee2d404f3b58eb0840bd1 Tue Dec 9 11:34:41 2025 -0800
- hgLiftOver min match filter with -multiple fixed. It has been allowing too-small regions in the output. Error was in system since 2013. fixes #17501
289c4a361a8f5192a4928b05a3a68c05afe7f816 Thu Dec 11 15:50:12 2025 -0800
- Little patch for udc.localDir and trackHub security for local bigDataUrl disallowed for non-local hubUrl. We have to double check the cached trackDb data. fixes #34544
0542bdef848a41fe04a2e043adaaed8eabbaa748 Fri Dec 12 11:37:02 2025 -0800
- freeMem was crashing for settings values, cannot do that for settings returned from trackDbCache. refs #34544, #36835, #36834
648f90bb5f2bbbf365a7005a69fdfa82c37057e0 Fri Dec 12 14:57:29 2025 -0800
- Revert "freeMem was crashing for settings values, cannot do that for settings returned from trackDbCache. refs #34544, #36835, #36834"
This reverts commit 0542bdef848a41fe04a2e043adaaed8eabbaa748.
Brian asked me to revert his for now.
b1d12cdd8bea10895a0ff1b787f5c0549cb76d7a Fri Dec 12 14:58:02 2025 -0800
- Revert "Little patch for udc.localDir and trackHub security for local bigDataUrl disallowed for non-local hubUrl. We have to double check the cached trackDb data. fixes #34544"
This reverts commit 289c4a361a8f5192a4928b05a3a68c05afe7f816.
Brian asked me to revert his for now since he is worried about speed.
I will have to test the speed impactd and seek other possible solutions.
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