c15a59c6ddc7428025519ec671af0a7d4649d7be
gperez2
  Thu Oct 30 16:50:26 2025 -0700
Releasing the new GENCODE Known Gene tracks V49, v49lift37, and VM38, refs #36169 #36167 #36165

diff --git src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra
deleted file mode 100644
index 4b343aaf651..00000000000
--- src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra
+++ /dev/null
@@ -1,46 +0,0 @@
-track knownGene
-table knownGene
-shortLabel GENCODE V49lift37
-longLabel GENCODE V49lift37
-# parent knownGeneArchive
-priority 1
-#priority 5
-visibility pack
-type bigGenePred knownGenePep knownGeneMrna
-bigDataUrl /gbdb/hg19/gencode/gencodeV49lift37.bb
-downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.knownGene.gtf.gz
-baseColorDefault genomicCodons
-group genes
-isGencode3 on
-directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
-labelFields geneName,name,geneName2,name2
-defaultLabelFields geneName
-itemRgb on
-#externalDb knownGeneV49lift37
-maxItems 50000
-html knownGeneV49lift37
-searchIndex name
-idXref kgAlias kgID alias
-intronGap 12
-defaultLinkedTables kgXref
-squishyPackPoint 1
-squishyPackField rank
-squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
-
-searchName knownGeneAcc
-searchTable knownGene
-searchMethod exact
-searchType knownGene
-shortCircuit 1
-semiShortCircuit 1
-termRegex ENST[0-9._]+
-searchPriority 9
-
-searchName knownGeneFast
-searchTable knownGene
-searchType knownGeneFast
-shortCircuit 1
-searchPriority 1001
-searchTrix /gbdb/hg19/knownGeneFastV49lift37.ix
-doPage 1
-