a0f7abd772e0e0b47c4a64ffdc43527b39454ccf
gperez2
  Thu Dec 11 21:27:58 2025 -0800
Updating the data of the gnomAD v4.1 CNV track with the gnomad.v4.1.cnv.all.bed data, refs #36788

diff --git src/hg/makeDb/trackDb/human/hg38/gnomad.ra src/hg/makeDb/trackDb/human/hg38/gnomad.ra
index f74fc9b3521..b54e9f26f89 100644
--- src/hg/makeDb/trackDb/human/hg38/gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg38/gnomad.ra
@@ -235,31 +235,31 @@
 filterLabel.af_controls Filter by common disease control allele frequency
 filterLabel.svtype Type of Variation
 filterValues.svtype BND|Breakend,CPX|Complex,CTX|Translocation,DEL|Deletion,DUP|Duplication,INS|Insertion,INV|Inversion,MCNV|Multi-allele CNV
 filter.svlen 50:199840172
 filterByRange.svlen on
 filterLabel.svlen Filter by Variant Size
 mouseOverField _mouseOver
 filterValues.FILTER PASS,HIGH_NCR,IGH_MHC_OVERLAP,UNRESOLVED,REFERENCE_ARTIFACT
 filterValuesDefault.FILTER PASS
 filterType.FILTER multipleListAnd
 html gnomadSv.html
 
 
 track gnomadCopyNumberVariants
 parent gnomadVariants on
-bigDataUrl /gbdb/hg38/gnomAD/v4/cnv/gnomad.v4.1.cnv.non_neuro_controls.bb
+bigDataUrl /gbdb/hg38/gnomAD/v4/cnv/gnomad.v4.1.cnv.all.bb
 shortLabel gnomAD Rare CNV Variants
 longLabel Genome Aggregation Database (gnomAD) - Rare CNV variants (<1% overall site frequency) v4.1
 dataVersion Release 4.1 (November 01, 2023)
 type bigBed 9 +
 itemRgb on
 visibility hide
 url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_cnv_r4
 urlLabel gnomAD Copy number variants Browser
 filterLabel.svtype Type of Variation
 filterValues.svtype DEL|Deletion,DUP|Duplication
 searchIndex name
 mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Size of variant</b>: ${svlen}<br> <b>Genes impacted by variant</b>: ${genes}<br> <b>Site frequency (non-neuro control samples)</b>: ${sf}
 html gnomadCNV