c15a59c6ddc7428025519ec671af0a7d4649d7be
gperez2
  Thu Oct 30 16:50:26 2025 -0700
Releasing the new GENCODE Known Gene tracks V49, v49lift37, and VM38, refs #36169 #36167 #36165

diff --git src/hg/makeDb/trackDb/human/hg38/knownGene.ra src/hg/makeDb/trackDb/human/hg38/knownGene.ra
index 9d539c42a59..a03d60b8ce3 100644
--- src/hg/makeDb/trackDb/human/hg38/knownGene.ra
+++ src/hg/makeDb/trackDb/human/hg38/knownGene.ra
@@ -1,61 +1,62 @@
 track knownGene
 table knownGene
-shortLabel GENCODE V48
-longLabel GENCODE V48
+shortLabel GENCODE V49
+longLabel GENCODE V49
 #parent knownGeneArchive
 priority 1
 #priority 5
 visibility pack
 type bigGenePred knownGenePep knownGeneMrna
-bigDataUrl /gbdb/hg38/gencode/gencodeV48.bb
+bigDataUrl /gbdb/hg38/gencode/gencodeV49.bb
 downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
 baseColorDefault genomicCodons
 group genes
 isGencode3 on
 directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
 labelFields geneName,name,geneName2,name2
 defaultLabelFields geneName
 itemRgb on
-#externalDb knownGeneV48
+#externalDb knownGeneV49
 maxItems 50000
-html knownGeneV48
+html knownGeneV49
 searchIndex name
 idXref kgAlias kgID alias
 intronGap 12
 hgsid on
 defaultLinkedTables kgXref
 squishyPackPoint 1
 squishyPackField rank
 squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
+pennantIcon Updated red ../goldenPath/newsarch.html#103125 "Updated Oct. 31, 2025"
 
 searchName knownGeneAcc
 searchTable knownGene
 searchMethod exact
 searchType knownGene
 shortCircuit 1
 semiShortCircuit 1
 termRegex ENST[0-9.]+
 searchPriority 9
 
 # Note: Planning to remove the Previous track now that we have the Archive track set
 #track knownGeneOldV45
 #shortLabel Old UCSC Genes
 #longLabel Previous Version of UCSC Genes
 #group genes
 #visibility hide
 #color 82,82,160
 #type genePred
 #hgsid on
 #oldToNew kgV45ToKgV46
 #baseColorUseCds given
 #baseColorDefault genomicCodons
 
 searchName knownGeneFast
 searchTable knownGene
 searchType knownGeneFast
 shortCircuit 1
 searchPriority 1001
-searchTrix /gbdb/hg38/knownGeneFastV48.ix
+searchTrix /gbdb/hg38/knownGeneFastV49.ix
 searchTrixContext on
 doPage 1