98193faa598cf04b4dbd2cdb0007e712d3d845cf gperez2 Thu Jun 25 06:11:04 2026 -0700 Updating the pennantIcons for the Variants in Papers superTrack and Varaico tracks, refs #37658 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index daf5232aa43..d2de5d2dadb 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -150,31 +150,31 @@ group phenDis visibility hide color 0,100,0 type bigBed 9 + release alpha mouseOverField trait bigDataUrl /gbdb/$D/bbi/phegeni.bb urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$ track varsInPubs shortLabel Variants in Papers longLabel Genetic Variants mentioned in scientific publications superTrack on group phenDis type bed 3 -pennantIcon Updated red +pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Varaico Variants and Varaico Variants (suppl) tracks to release 3 Jun. 25, 2026" track mastermind shortLabel Mastermind Variants longLabel Genomenon Mastermind Variants extracted from full text publications release alpha visibility dense type bigBed 9 + urls url=$$ bigDataUrl /gbdb/$D/bbi/mastermind.bb noScoreFilter on exonNumbers off mouseOver <b>Variant</b>: $name<br> <b>Gene</b>: $gene<br> <b>Linkout</b>: <a href="$url" target="_blank">$_mouseOver</a><br> <b>Article count 1</b>: $mmcnt1<br> <b>Article count 2</b>: $mmcnt2<br> <b>Article count 3</b>: $mmcnt3 itemRgb on filter.mmcnt1 0 filter.mmcnt2 0 @@ -229,47 +229,47 @@ bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb noScoreFilter on exonNumbers off itemRgb on parent varsInPubs pack urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$" mouseOver $name found in ${numPubmedIds} PubMed articles html varsInPubs track varaico shortLabel Varaico Variants longLabel Varaico Variants extracted from full text publications, titles, and abstracts visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaico.bb - pennantIcon Updated red + pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Jun. 25, 2026" noScoreFilter on exonNumbers off # itemRgb on dataVersion release 3 (20260527) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect html varaico.html track varaicoSuppl shortLabel Varaico Variants (suppl) longLabel Varaico Variants extracted from Supplementary Data visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb - pennantIcon Updated red + pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Jun. 25, 2026" noScoreFilter on exonNumbers off # itemRgb on dataVersion release 3 (20260527) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect html varaico.html track caseControl compositeTrack on shortLabel Case Control longLabel Case Control Consortium group phenDis visibility hide