c15a59c6ddc7428025519ec671af0a7d4649d7be gperez2 Thu Oct 30 16:50:26 2025 -0700 Releasing the new GENCODE Known Gene tracks V49, v49lift37, and VM38, refs #36169 #36167 #36165 diff --git src/hg/makeDb/trackDb/human/hg19/knownGene.ra src/hg/makeDb/trackDb/human/hg19/knownGene.ra index 4ee3e961265..270d76606a1 100644 --- src/hg/makeDb/trackDb/human/hg19/knownGene.ra +++ src/hg/makeDb/trackDb/human/hg19/knownGene.ra @@ -1,46 +1,47 @@ track knownGene table knownGene -shortLabel GENCODE V48lift37 -longLabel GENCODE V48lift37 +shortLabel GENCODE V49lift37 +longLabel GENCODE V49lift37 # parent knownGeneArchive priority 1 #priority 5 visibility pack type bigGenePred knownGenePep knownGeneMrna -bigDataUrl /gbdb/hg19/gencode/gencodeV48lift37.bb +bigDataUrl /gbdb/hg19/gencode/gencodeV49lift37.bb downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.knownGene.gtf.gz baseColorDefault genomicCodons group genes isGencode3 on directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s labelFields geneName,name,geneName2,name2 defaultLabelFields geneName itemRgb on -#externalDb knownGeneV48lift37 +#externalDb knownGeneV49lift37 maxItems 50000 -html knownGeneV48lift37 +html knownGeneV49lift37 searchIndex name idXref kgAlias kgID alias intronGap 12 defaultLinkedTables kgXref squishyPackPoint 1 squishyPackField rank squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking) +pennantIcon Updated red ../goldenPath/newsarch.html#103125 "Updated Oct. 31, 2025" searchName knownGeneAcc searchTable knownGene searchMethod exact searchType knownGene shortCircuit 1 semiShortCircuit 1 termRegex ENST[0-9._]+ searchPriority 9 searchName knownGeneFast searchTable knownGene searchType knownGeneFast shortCircuit 1 searchPriority 1001 -searchTrix /gbdb/hg19/knownGeneFastV48lift37.ix +searchTrix /gbdb/hg19/knownGeneFastV49lift37.ix doPage 1