c15a59c6ddc7428025519ec671af0a7d4649d7be
gperez2
  Thu Oct 30 16:50:26 2025 -0700
Releasing the new GENCODE Known Gene tracks V49, v49lift37, and VM38, refs #36169 #36167 #36165

diff --git src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
deleted file mode 100644
index c8c1123c8ec..00000000000
--- src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
+++ /dev/null
@@ -1,41 +0,0 @@
-track knownGene
-shortLabel GENCODE VM38
-longLabel GENCODE VM38
-#parent knownGeneArchive
-priority 1
-#priority 5
-visibility pack
-type bigGenePred
-bigDataUrl /gbdb/mm39/gencode/gencodeVM38.bb
-baseColorDefault genomicCodons
-group genes
-isGencode3 on
-directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
-labelFields geneName,name,geneName2,name2
-defaultLabelFields geneName
-itemRgb on
-#externalDb knownGeneVM38
-maxItems 50000
-html knownGeneVM38
-searchIndex name
-idXref kgAlias kgID alias
-intronGap 12
-defaultLinkedTables kgXref
-
-searchName knownGeneAcc
-searchTable knownGene
-searchMethod exact
-searchType knownGene
-shortCircuit 1
-semiShortCircuit 1
-termRegex ENST[0-9.]+
-searchPriority 9
-
-searchName knownGeneFast
-searchTable knownGene
-searchType knownGeneFast
-shortCircuit 1
-searchPriority 1001
-searchTrix /gbdb/mm39/knownGeneFastVM38.ix
-doPage 1
-