c15a59c6ddc7428025519ec671af0a7d4649d7be gperez2 Thu Oct 30 16:50:26 2025 -0700 Releasing the new GENCODE Known Gene tracks V49, v49lift37, and VM38, refs #36169 #36167 #36165 diff --git src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra index 65f460dea28..c9428553d8c 100644 --- src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra +++ src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra @@ -1,41 +1,42 @@ track knownGene -shortLabel GENCODE VM37 -longLabel GENCODE VM37 +shortLabel GENCODE VM38 +longLabel GENCODE VM38 #parent knownGeneArchive priority 1 #priority 5 visibility pack type bigGenePred -bigDataUrl /gbdb/mm39/gencode/gencodeVM37.bb +bigDataUrl /gbdb/mm39/gencode/gencodeVM38.bb baseColorDefault genomicCodons group genes isGencode3 on directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s labelFields geneName,name,geneName2,name2 defaultLabelFields geneName itemRgb on -#externalDb knownGeneVM37 +#externalDb knownGeneVM38 maxItems 50000 -html knownGeneVM37 +html knownGeneVM38 searchIndex name idXref kgAlias kgID alias intronGap 12 defaultLinkedTables kgXref +pennantIcon Updated red ../goldenPath/newsarch.html#103125 "Updated Oct. 31, 2025" searchName knownGeneAcc searchTable knownGene searchMethod exact searchType knownGene shortCircuit 1 semiShortCircuit 1 termRegex ENST[0-9.]+ searchPriority 9 searchName knownGeneFast searchTable knownGene searchType knownGeneFast shortCircuit 1 searchPriority 1001 -searchTrix /gbdb/mm39/knownGeneFastVM37.ix +searchTrix /gbdb/mm39/knownGeneFastVM38.ix doPage 1