f345e1c69072f76c484b0ad82423f059a0fff9df hiram Wed Dec 10 13:35:24 2025 -0800 do not need the extra print of chromAuthority diff --git src/hg/makeDb/doc/asmHubs/mkGenomes.pl src/hg/makeDb/doc/asmHubs/mkGenomes.pl index acbc72a1fc2..a184fe6478b 100755 --- src/hg/makeDb/doc/asmHubs/mkGenomes.pl +++ src/hg/makeDb/doc/asmHubs/mkGenomes.pl @@ -239,31 +239,30 @@ $commonName{$asmId} = $commonName; push @orderList, $asmId; printf STDERR "orderList[$assemblyCount] = $asmId\n"; ++$assemblyCount; } close (FH); my $buildDone = 0; my $orderKey = 0; foreach my $asmId (@orderList) { ++$orderKey; next if ($asmId !~ m/^GC/); my $chromAuthority = ""; $chromAuthority = `~/kent/src/hg/makeDb/doc/asmHubs/chromAuthority.pl $asmId 2> /dev/null`; chomp $chromAuthority; - printf STDERR "# chromAuthority: '%s'\n", $chromAuthority; my ($gcPrefix, $accession, undef) = split('_', $asmId); my $accessionId = sprintf("%s_%s", $gcPrefix, $accession); my $accessionDir = substr($asmId, 0 ,3); $accessionDir .= "/" . substr($asmId, 4 ,3); $accessionDir .= "/" . substr($asmId, 7 ,3); $accessionDir .= "/" . substr($asmId, 10 ,3); my $buildDir = "/hive/data/genomes/asmHubs/refseqBuild/$accessionDir/$asmId"; my $destDir = "/hive/data/genomes/asmHubs/$accessionDir/$accessionId"; if ($gcPrefix eq "GCA") { $buildDir = "/hive/data/genomes/asmHubs/genbankBuild/$accessionDir/$asmId"; } if ( ! -s "${buildDir}/${asmId}.chrom.sizes" ) { printf STDERR "# ERROR: missing ${asmId}.chrom.sizes in\n# ${buildDir}\n"; next; }