ffea9fcf11c914d47c78c86bf4f2fb808094d1b2 hiram Thu Jun 25 09:30:04 2026 -0700 correct name of script refs #36233 diff --git src/hg/utils/otto/chainTables/toFromCounts.sh src/hg/utils/otto/chainTables/toFromCounts.sh index 965a444058a..a6c0c2106c7 100755 --- src/hg/utils/otto/chainTables/toFromCounts.sh +++ src/hg/utils/otto/chainTables/toFromCounts.sh @@ -1,28 +1,28 @@ #!/bin/bash -### from source tree: kent/src/hg/utils/otto/chainTables/toFromCount.sh +### from source tree: kent/src/hg/utils/otto/chainTables/toFromCounts.sh ### otto cron job: -### 11 3 * * * /hive/data/inside/GenArk/checkChainTables/toFromCount.sh +### 11 3 * * * /hive/data/inside/GenArk/checkChainTables/toFromCounts.sh ### cd /hive/data/inside/GenArk/checkChainTables hgsql -N -e 'select fromDb,toDb from liftOverChain;' hgcentraltest \ | sort -u > liftOverChain.fromDb.toDb.txt hgsql -N -e 'select fromDb,toDb from quickLiftChain;' hgcentraltest \ | sort -u > quickLiftChain.fromDb.toDb.txt loC=`md5sum liftOverChain.fromDb.toDb.txt | cut -d' ' -f1` qlC=`md5sum quickLiftChain.fromDb.toDb.txt | cut -d' ' -f1` if [ "${loC}" != "${qlC}" ]; then printf "ERROR from: /hive/data/inside/GenArk/checkChainTables/toFromCounts.sh\n" 1>&2 printf "ERROR: liftOverChain from,toDb is not equal to quickLiftChain\n" 1>&2 printf "perhaps missing from liftOverChain:\n" 1>&2 comm -13 liftOverChain.fromDb.toDb.txt quickLiftChain.fromDb.toDb.txt 1>&2 printf "perhaps missing from quickLiftChain:\n" 1>&2 comm -23 liftOverChain.fromDb.toDb.txt quickLiftChain.fromDb.toDb.txt 1>&2 exit 255 fi