f64ee094d4f3ebf0399403c71094c012482e89fb
jbirgmei
  Wed Oct 29 03:05:04 2025 -0700
Added Varaico suppl track

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 164e47fdf02..18106afc6c0 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -230,33 +230,80 @@
         pennantIcon New red ../goldenPath/newsarch.html#080125 "Released Aug. 01, 2025"
         html varsInPubs
 
         track varaico
         shortLabel Varaico Variants
         longLabel Varaico Variants extracted from full text publications, titles, and abstracts
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/varaico.bb
         noScoreFilter on
         exonNumbers off
         # itemRgb on
         dataVersion release 1
         parent varsInPubs pack
         urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
-        mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $pmidCount <br> <b>Variant Effect:</b> $variantEffect
+        mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
         html varaico.html
 
+        track varaico
+        shortLabel Varaico Variants (suppl)
+        longLabel Varaico Variants extracted from Supplementary Data
+        visibility dense
+        type bigBed 9 +
+        bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb
+        noScoreFilter on
+        exonNumbers off
+        # itemRgb on
+        dataVersion release 1
+        parent varsInPubs pack
+        urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
+        mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
+        html varaico.html
+
+        track varaicoTest
+        shortLabel Varaico Main Test
+        longLabel Varaico Main Test
+        visibility dense
+        type bigBed 9 +
+        bigDataUrl /hive/users/jbirgmei/amelie2/data/out/full/$D/normalized_variants.$D.bb
+        noScoreFilter on
+        exonNumbers off
+        # itemRgb on
+        dataVersion release 1
+        parent varsInPubs pack
+        urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
+        mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
+        html varaico.html
+        release alpha
+
+        track varaicoSupplTest
+        shortLabel Varaico Suppl Test
+        longLabel Varaico Suppl Test
+        visibility dense
+        type bigBed 9 +
+        bigDataUrl /hive/users/jbirgmei/amelie2/data/out/full/$D/normalized_variants_supplements.$D.bb
+        noScoreFilter on
+        exonNumbers off
+        # itemRgb on
+        dataVersion release 1
+        parent varsInPubs pack
+        urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
+        mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
+        html varaico.html
+        release alpha
+
 track caseControl
 compositeTrack on
 shortLabel Case Control
 longLabel Case Control Consortium
 group phenDis
 visibility hide
 type chromGraph
 minMax 0,15
 linesAt 5,10
 
     track cccTrendPvalBd
     parent caseControl
     shortLabel CCC Bipolar Dis
     longLabel Case Control Consortium Bipolar Disorder Trend -log10 P-value
     priority 1