06cdca9abaf78e2d0d4c0b3b1f781be687cbc31b
jnavarr5
  Tue Oct 28 09:43:24 2025 -0700
Swapping the colors of Definitive and Strong as Sarah Hunt mentioned they are wrong in an email, refs #36469

diff --git src/hg/utils/otto/genCC/doGenCC.py src/hg/utils/otto/genCC/doGenCC.py
index 28f99425169..d3c07283e09 100644
--- src/hg/utils/otto/genCC/doGenCC.py
+++ src/hg/utils/otto/genCC/doGenCC.py
@@ -81,43 +81,43 @@
         if geneSymbol not in maneGeneSymbolCoords.keys():
             maneGeneSymbolCoords[geneSymbol] = {}
             maneGeneSymbolCoords[geneSymbol]['chrom'] = line[0]
             maneGeneSymbolCoords[geneSymbol]['chromStart'] = line[1]
             maneGeneSymbolCoords[geneSymbol]['chromEnd'] = line[2]
             maneGeneSymbolCoords[geneSymbol]['strand'] = line[5]
             maneGeneSymbolCoords[geneSymbol]['ensGene'] = line[17]
             maneGeneSymbolCoords[geneSymbol]['ensTranscript'] = line[3]
             maneGeneSymbolCoords[geneSymbol]['refSeqAccession'] = line[21]
     openFile.close()
     bash("rm -f /hive/data/outside/otto/genCC/mane.bed")
     return(maneGeneSymbolCoords)
 
 def assignRGBcolorByEvidenceClassification(classification):
     if classification == "Definitive":
-        classificationRgb = "39,103,73"
+        classificationRgb = "56,161,105"
     elif classification == "Disputed Evidence":
         classificationRgb = "229,62,62"
     elif classification == "Limited":
         classificationRgb = "252,129,129"
     elif classification == "Moderate":
         classificationRgb = "104,211,145"
     elif classification == "No Known Disease Relationship":
         classificationRgb = "113,128,150"
     elif classification == "Refuted Evidence":
         classificationRgb = "155,44,44"
     elif classification == "Strong":
-        classificationRgb = "56,161,105"
+        classificationRgb = "39,103,73"
     elif classification == "Supportive":
         classificationRgb = "99,179,237"
     else:
         print("There was an unknown classification: "+classification)
     return(classificationRgb)
 
 def buildFileHg38(genCCfile,outPutFile):
     inputGenCCFile = open(genCCfile,'r',encoding="utf-8")
     outputHg38File = open(outPutFile,'w',encoding='utf-8')
     n=0
     maneGeneSymbolCoords = makeManeDic()
     badItems = []
     for line in inputGenCCFile:
         if line.startswith('"uuid'):
             continue