21fd9312696790cba374e2ae8d8f8d74ab63d5dd
lrnassar
  Sun Jun 21 10:01:27 2026 -0700
Adding a cCRE_class filter to the coreCcres composite on hg38 and mm10. The filter lives on the cCREs_view so it is inherited by all biosample cCRE subtracks, matching the filter style of the cCREregistry track. Values and order follow the registry as closely as the sample-specific class vocabulary allows. No RM.

diff --git src/hg/makeDb/trackDb/human/hg38/encode4.ccres.ra src/hg/makeDb/trackDb/human/hg38/encode4.ccres.ra
index 515515987ff..88358f940d4 100644
--- src/hg/makeDb/trackDb/human/hg38/encode4.ccres.ra
+++ src/hg/makeDb/trackDb/human/hg38/encode4.ccres.ra
@@ -11,30 +11,33 @@
 subGroup2 biosampleType Biosample_type tissue=Tissue primary_cell=Primary_cell in_vitro_differentiated_cells=In_vitro_differentiated_cells organoid=Organoid cell_line=Cell_line
 subGroup6 dataType Data_type typeCcres=cCREs typeDNase=DNase typeH3k4me3=H3K4me3 typeH3k27ac=H3K27ac typeCtcf=CTCF
 dimensions dimX=biosampleType dimY=organ
 shortLabel ENCODE4 Core Collection
 visibility hide
 subGroup1 organ Organ_Tissue adrenal_gland=Adrenal_gland blood=Blood blood_vessel=Blood_vessel bone=Bone bone_marrow=Bone_marrow brain=Brain breast=Breast connective_tissue=Connective_tissue embryo=Embryo epithelium=Epithelium esophagus=Esophagus eye=Eye heart=Heart large_intestine=Large_intestine liver=Liver lung=Lung muscle=Muscle nerve=Nerve pancreas=Pancreas penis=Penis prostate=Prostate skin=Skin small_intestine=Small_intestine spleen=Spleen stomach=Stomach testis=Testis thyroid=Thyroid uterus=Uterus vagina=Vagina
 sortOrder dataType=+ organ=+ biosampleType=+ donor=+
 dataVersion ENCODE release 4, 2024. (ENCODE4 data includes ENCODE2, ENCODE3, and the Roadmap Epigenomics Project)
 
 track cCREs_view
 view cCREs_view
 parent coreCcres
 shortLabel cCREs
 visibility squish
 type bigBed
+filterValues.cCRE_class CA-only|Chromatin accessibility only (CA-only),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhancer|Proximal enhancer,Promoter|Promoter,Low-DNase|Low-DNase
+filterType.cCRE_class multipleListOr
+filterLabel.cCRE_class cCRE class
 
 track ENCFF136RNO_ENCFF630BQS_ENCFF611XLA_ENCFF975BGM
 priority 118
 type bigBed 9 + 5
 longLabel OCI-LY7: (1) cCREs
 parent cCREs_view off
 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF136RNO_ENCFF630BQS_ENCFF611XLA_ENCFF975BGM.bb
 subGroups organ=blood view=cCREs_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeCcres
 shortLabel ENCFF136RNO_ENCFF630BQS_ENCFF611XLA_ENCFF975BGM
 visibility squish
 mouseOver <b>ID:</b> <a target="_blank" href="https://screen.wenglab.org/search?assembly=GRCh38&accessions=${name}">${name}</a><br><b>Class:</b> ${cCRE_class}<br><b>DNase Z-score:</b> ${DNase_Z_score}<br><b>H3K4me3 Z-score:</b> ${H3K4me3_Z_score}<br><b>H3K27ac Z-score:</b> ${H3K27ac_Z_score}<br><b>CTCF Z-score:</b> ${CTCF_Z_score}
 url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$
 urlLabel cCRE details on SCREEN
 
 track ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB