21fd9312696790cba374e2ae8d8f8d74ab63d5dd
lrnassar
  Sun Jun 21 10:01:27 2026 -0700
Adding a cCRE_class filter to the coreCcres composite on hg38 and mm10. The filter lives on the cCREs_view so it is inherited by all biosample cCRE subtracks, matching the filter style of the cCREregistry track. Values and order follow the registry as closely as the sample-specific class vocabulary allows. No RM.

diff --git src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
index 52043c063d6..c68eefe4211 100644
--- src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
@@ -11,30 +11,33 @@
 subGroup4 simpleBiosample Biosample CH12_LX=CH12_LX MEL=MEL cerebellum_male_adult_8_weeks=cerebellum_male_adult_8_weeks forebrain_postnatal_0_days=forebrain_postnatal_0_days heart_male_adult_8_weeks=heart_male_adult_8_weeks heart_postnatal_0_days=heart_postnatal_0_days hindbrain_postnatal_0_days=hindbrain_postnatal_0_days kidney_male_adult_8_weeks=kidney_male_adult_8_weeks kidney_postnatal_0_days=kidney_postnatal_0_days liver_embryo_14_5_days=liver_embryo_14_5_days liver_male_adult_8_weeks=liver_male_adult_8_weeks liver_postnatal_0_days=liver_postnatal_0_days lung_embryo_14_5_days=lung_embryo_14_5_days lung_postnatal_0_days=lung_postnatal_0_days midbrain_postnatal_0_days=midbrain_postnatal_0_days spleen_male_adult_8_weeks=spleen_male_adult_8_weeks stomach_postnatal_0_days=stomach_postnatal_0_days thymus_male_adult_8_weeks=thymus_male_adult_8_weeks
 subGroup5 dataType Data_type typeCcres=cCREs typeDNase=DNase typeH3k4me3=H3K4me3 typeH3k27ac=H3K27ac typeCtcf=CTCF
 dimensions dimX=biosampleType dimY=organ
 sortOrder dataType=+ organ=+ biosampleType=+
 shortLabel ENCODE4 Core Collection
 visibility hide
 dataVersion ENCODE release 4, 2024. (Includes ENCODE2, ENCODE3, and mouse ENCODE data)
 pennantIcon New red
 
 track cCREs_view
 view cCREs_view
 parent coreCcres
 shortLabel cCREs
 visibility squish
 type bigBed
+filterValues.cCRE_class CA-only|Chromatin accessibility only (CA-only),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhancer|Proximal enhancer,Promoter|Promoter,Low-DNase|Low-DNase
+filterType.cCRE_class multipleListOr
+filterLabel.cCRE_class cCRE class
 
 track ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY
 priority 15
 type bigBed 9 + 5
 longLabel Midbrain, postnatal (0 days): (1) cCREs
 parent cCREs_view off
 bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY.bb
 subGroups organ=brain view=cCREs_view simpleBiosample=midbrain_postnatal_0_days biosampleType=tissue dataType=typeCcres
 shortLabel Midbr P0 cCREs
 visibility squish
 mouseOver <b>ID:</b> <a target="_blank" href="https://screen.wenglab.org/search?assembly=mm10&accessions=${name}">${name}</a><br><b>Class:</b> ${cCRE_class}<br><b>DNase Z-score:</b> ${DNase_Z_score}<br><b>H3K4me3 Z-score:</b> ${H3K4me3_Z_score}<br><b>H3K27ac Z-score:</b> ${H3K27ac_Z_score}<br><b>CTCF Z-score:</b> ${CTCF_Z_score}
 url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
 urlLabel cCRE Core Collection details on SCREEN:
 
 track ENCFF784TNW_ENCFF990HLQ_ENCFF258KWF_ENCFF811CFN