5ac72ff7faebbfea5a4eb9a16815111d36304462 markd Fri Dec 12 02:01:42 2025 -0800 improved formating of recount3 track description diff --git src/hg/makeDb/trackDb/recount3.html src/hg/makeDb/trackDb/recount3.html index 22489068208..a979bf4a533 100644 --- src/hg/makeDb/trackDb/recount3.html +++ src/hg/makeDb/trackDb/recount3.html @@ -50,41 +50,49 @@

Data Access

The raw data can be explored interactively with the Table Browser or the Data Integrator. For automated analysis, the data may be queried from our REST API.
Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

-The original junction files can be found at
- -https://snaptron.cs.jhu.edu/data/gtexv2/junctions.bgz
- -https://snaptron.cs.jhu.edu/data/tcgav2/junctions.bgz
- -https://snaptron.cs.jhu.edu/data/srav3h/junctions.bgz
- -https://snaptron.cs.jhu.edu/data/ccle/junctions.bgz
- -https://snaptron.cs.jhu.edu/data/srav1m/junctions.bgz (mouse)
+The original junction files for human can be found at: +

+ +

+The mouse junction file is at: +

+

Methods

Junction files were converted to bed format. For grayscaling total read count was log10 transformed and multiplied by 10 to get a score between 0 and 225, which can be found in the bed score field.

References

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT et al.