0adde15fcc0c841a234ab2ea86a4a8fdbef3d49b
markd
Fri Dec 12 01:51:06 2025 -0800
switch recount3 intron track to color items by splice junction motif #34886
diff --git src/hg/makeDb/trackDb/mouse/mm10/recount3.ra src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
index 6f28d7e562d..4b9110b9a50 100644
--- src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
@@ -1,27 +1,27 @@
track recount3
shortLabel recount3
longLabel Recount 3 SRA introns
group rna
type bigBed 9 +
visibility hide
itemRgb on
labelFields none
#maxWindowToDraw 10000000
bigDataUrl /gbdb/$D/recount3/srav1m.bb
filterLabel.strand Strand
filterType.strand multiple
filterValues.strand +,-,.
filterLabel.readcount Filter by supporting split reads
filterByRange.readcount on
filter.readcount 10000:2000000000
filterLimits.readcount 0:2000000000
filterLabel.size Filter by intron size
filterByRange.size on
filter.size 30:100000
-filterLabel.sjPair Filter by splice junctions (format GT/AG)
+filterLabel.sjPair splice junctions (format GT/AG)
filterType.sjPair wildcard
filterText.sjPair *
mouseOver $readcount supporting split reads
Strand $strand
Size $size
Splice donor $donor
Splice acceptor $acceptor
iframeUrl https://snaptron.cs.jhu.edu/snaptron-studies/jxn2studies?compilation=srav1m&jid=$$&coords=$S:${-$}
iframeOptions height='300' width='1000' scrolling='yes'