0adde15fcc0c841a234ab2ea86a4a8fdbef3d49b markd Fri Dec 12 01:51:06 2025 -0800 switch recount3 intron track to color items by splice junction motif #34886 diff --git src/hg/makeDb/trackDb/mouse/mm10/recount3.ra src/hg/makeDb/trackDb/mouse/mm10/recount3.ra index 6f28d7e562d..4b9110b9a50 100644 --- src/hg/makeDb/trackDb/mouse/mm10/recount3.ra +++ src/hg/makeDb/trackDb/mouse/mm10/recount3.ra @@ -1,27 +1,27 @@ track recount3 shortLabel recount3 longLabel Recount 3 SRA introns group rna type bigBed 9 + visibility hide itemRgb on labelFields none #maxWindowToDraw 10000000 bigDataUrl /gbdb/$D/recount3/srav1m.bb filterLabel.strand Strand filterType.strand multiple filterValues.strand +,-,. filterLabel.readcount Filter by supporting split reads filterByRange.readcount on filter.readcount 10000:2000000000 filterLimits.readcount 0:2000000000 filterLabel.size Filter by intron size filterByRange.size on filter.size 30:100000 -filterLabel.sjPair Filter by splice junctions (format GT/AG) +filterLabel.sjPair splice junctions (format GT/AG) filterType.sjPair wildcard filterText.sjPair * mouseOver $readcount supporting split reads<br>Strand $strand<br>Size $size<br>Splice donor $donor<br>Splice acceptor $acceptor iframeUrl https://snaptron.cs.jhu.edu/snaptron-studies/jxn2studies?compilation=srav1m&jid=$$&coords=$S:${-$} iframeOptions height='300' width='1000' scrolling='yes'