030cc7d4165ee6b37bd4c9ecfb443fb39ac2468d max Mon Nov 3 07:59:26 2025 -0800 updating mexico biobank track, and related tracks, refs #36259 diff --git src/hg/makeDb/trackDb/human/hg38/trackDb.ra src/hg/makeDb/trackDb/human/hg38/trackDb.ra index a6fcb707233..c42e9ec6b4c 100644 --- src/hg/makeDb/trackDb/human/hg38/trackDb.ra +++ src/hg/makeDb/trackDb/human/hg38/trackDb.ra @@ -855,31 +855,30 @@ termRegex cg[0-9]+ semiShortCircuit 1 searchPriority 55 include trackDb.470way.ra track michaelMaf release alpha shortLabel Michae's Big MAF longLabel Michael Alignment bigDataUrl http://genome.senckenberg.de/data/hg38/bigMaf.bb summary http://genome.senckenberg.de/data/hg38/bigMafSummary.bb type bigMaf speciesOrder panPan3 panTro6 gorGor6 ponAbe3 HLhylMol2 HLnomLeu4 HLpapAnu5 HLtheGel1 cerAty1 HLmanSph1 manLeu1 macNem1 HLmacFas6 HLmacFus1 rheMac10 HLcerMon1 HLcerNeg1 HLallNig1 HLeryPat1 chlSab2 HLpilTep2 colAng1 HLsemEnt1 HLtraFra1 nasLar1 HLpygNem1 HLrhiRox2 rhiBie1 HLpitPit1 HLpleDon1 HLateGeo1 HLaloPal1 HLsaiBol1 saiBol1 HLsapApe1 cebCap1 HLcebAlb1 aotNan1 HLsagImp1 HLcalJac4 HLcalPym1 tarSyr2 HLnycCou1 otoGar3 HLcheMed1 proCoq1 HLindInd1 HLlemCat1 HLproSim1 HLeulFul1 HLeulMon1 eulFla1 HLeulFla1 eulMac1 HLmicTav1 HLmicSpe31 micMur3 HLmirZaz1 HLmirCoq1 HLdauMad1 HLgalVar2 HLacoRus1 HLacoCah1 HLpsaObe1 HLmerUng1 HLrhoOpi1 HLratNor7 rn6 HLratRat7 mm39 mm10 HLmusSpi1 HLmusSpr1 HLmusCar1 HLmusPah1 HLmasCou1 HLapoSyl1 HLgraSur1 HLarvNil1 HLcriGri3 mesAur1 HLonyTor1 HLperNas1 HLperCri1 HLperEre1 HLperCal2 HLperLeu1 HLperManBai2 HLperPol1 HLneoLep1 HLsigHis1 HLondZib1 HLmyoGla2 HLellTal1 HLellLut1 HLarvAmp1 HLmicFor1 HLmicOec1 micOch1 HLmicArv1 HLmicAgr2 HLcriGam1 nanGal1 HLrhiPru1 jacJac1 HLallBul1 HLzapHud1 HLcasCan3 HLperLonPac1 HLdipSte1 dipOrd2 HLpedCap1 HLcteGun1 HLhysCri1 HLereDor1 HLcoePre1 HLdasPun1 HLhydHyd1 HLcavTsc1 cavPor3 cavApe1 HLdolPat1 chiLan1 HLdinBra1 HLmyoCoy1 HLcteSoc1 octDeg1 HLthrSwi1 HLpetTyp1 hetGla2 HLfukDam2 HLaplRuf1 HLsciVul1 HLsciCar1 HLxerIna1 HLmarFla1 HLmarHim1 HLmarMar1 HLmarVan1 HLmarMon1 HLmarMon2 HLspeDau1 HLuroPar1 speTri2 HLcynGun1 HLmusAve1 HLgraMur1 HLgliGli1 ochPri3 HLsylBac1 HLoryCunCun4 oryCun2 HLoryCun3 HLlepAme1 HLlepTim1 tupBel1 tupChi1 panHod1 HLoviCan1 HLhemHyl1 HLoviCan2 HLoviNivLyd1 HLoviAmm1 HLoviAri5 HLoviOri1 HLammLer1 HLoreAme1 HLcapSib1 HLcapIbe1 HLcapHir2 HLcapAeg1 HLconTau2 HLbeaHun1 HLdamLun1 HLoryGaz1 HLoryDam1 HLhipNig1 HLhipEqu1 HLredRed1 HLkobEll1 HLkobLecLec1 HLmadKir1 HLrapCam1 HLeudTho1 HLsaiTat1 HLantMar1 HLlitWal1 HLcepHar1 HLsylGri1 HLphiMax1 HLoreOre1 HLneoPyg1 HLnanGra1 HLproPrz1 HLneoMos1 HLaepMel1 HLbubBub2 HLsynCaf1 HLtraImb1 HLtraStr1 HLtraScr1 HLbosFro1 HLbosGau1 HLbosGru1 HLbosMut2 bosTau9 HLbosInd2 bisBis1 HLmosMos1 HLmosBer1 HLmosChr1 HLhydIne1 HLcapPyg1 HLalcAlc1 HLelaDav1 HLranTar1 HLranTarGra2 HLodoHem1 HLodoVir3 HLodoVir2 HLodoVir1 HLmunRee1 HLmunMun1 HLmunCri1 HLcerHanYar1 HLaxiPor1 HLprzAlb1 HLcerEla1 HLantAme1 HLokaJoh2 HLgirCam1 HLgirTip1 HLgirCam2 HLtraKan1 HLtraJav1 orcOrc1 HLhipAmp1 HLhipAmp3 HLphyCat2 phyCat1 HLkogBre1 HLplaMin1 HLzipCav1 HLmesBid1 HLlagObl1 HLgloMel1 HLpepEle1 HLsouChi1 HLturAdu2 HLturAdu1 HLturTru4 turTru2 HLturTru3 HLdelLeu2 HLmonMon1 HLneoAsi1 HLphoSin1 HLphoPho2 HLphoPho1 lipVex1 HLponBla1 HLlniGeo1 balAcu1 HLbalBon1 HLbalPhy1 HLmegNov1 HLbalMus1 HLbalEde1 HLescRob1 HLeubGla1 HLeubJap1 HLbalMys1 susScr11 HLcatWag1 HLcamFer3 HLcamDro2 HLcamBac1 HLlamGla1 HLlamGuaCac1 HLlamGlaCha1 HLvicPacHua3 HLvicVicMen1 vicPac2 HLtapTer1 HLtapInd1 HLtapInd2 HLrhiUni1 HLdicSum1 HLdicBic1 cerSim1 HLcerSimCot1 equPrz1 equCab3 HLequQuaBoe1 HLequAsi1 HLequAsiAsi2 HLursThi1 HLursAme1 HLursAme2 ursMar1 HLursArc1 HLailMel2 HLpotFla1 HLnasNar1 HLbasSum1 HLproLot1 HLeriBar1 HLhalGry1 HLphoVit1 neoSch1 lepWed1 HLmirLeo1 odoRosDiv1 HLodoRos1 HLcalUrs1 HLarcGaz2 HLzalCal1 HLeumJub1 HLailFul2 HLmusFur2 HLmusPut1 HLmusErm1 HLneoVis1 enhLutKen1 enhLutNer1 HLlutLut1 HLlonCan1 HLpteBra1 HLpteBra2 HLgulGul1 HLmarZib1 HLcroCro1 HLhyaHya1 HLparHer1 HLpanLeo1 HLpanOnc2 HLpanOnc1 HLpanPar1 panTig1 HLneoNeb1 HLfelNig1 felCat9 HLpumYag1 HLlynPar1 HLlynCan1 HLpriBen1 HLpumCon1 HLaciJub2 HLtaxTax1 HLmirAng2 HLvulVul1 HLvulLag1 HLlycPic2 HLlycPic3 canFam4 HLcanLupDin1 canFam5 HLmanJav1 HLmanJav2 HLmanPen2 manPen1 HLphaTri2 HLmanTri1 HLmelCap1 HLspiGra1 HLmunMug1 HLhelPar1 HLsurSur1 HLsurSur2 HLcryFer2 HLsacBil1 HLnatTum1 HLmyoMyo6 myoDav1 HLmyoLuc1 myoLuc2 myoBra1 HLmyoSep1 HLmurAurFea1 HLnycHum2 HLaeoCin1 HLlasBor1 eptFus1 HLantPal1 HLpipKuh2 HLpipPip1 HLpipPip2 HLminSch1 HLminNat1 HLmolMol2 HLtadBra2 HLtadBra1 HLmacCal1 HLlepYer1 HLgloSor2 HLanoCau1 HLartJam2 HLartJam1 HLstuHon1 HLcarPer3 HLcarPer2 HLtonSau1 HLphyDis3 HLdesRot2 HLmicHir1 ptePar1 HLmorBla1 HLnocLep2 HLnocLep1 HLeonSpe1 HLrouLes1 HLrouAeg4 HLrouMad1 HLrhiSed1 HLrhiTri1 HLrhiLuc1 HLrhiSin1 HLrhiAff1 HLaseSto1 HLcraTho1 HLmegLyr2 HLhipArm1 HLhipLar1 HLhipGal1 HLhipCyc1 HLrhiFer5 HLpteRuf1 HLpteGig1 HLpteVam2 HLptePse1 pteAle1 HLeidHel2 HLeidDup1 HLmacSob1 HLcynBra1 HLsolPar1 eriEur2 sorAra2 HLuroGra1 HLscaAqu1 HLtalOcc1 conCri1 echTel2 HLmicTal1 eleEdw1 oryAfe1 chrAsi1 HLhetBru1 HLproCap3 HLloxAfr4 HLeleMax1 HLhydGig1 triMan1 HLdugDug1 dasNov3 HLtolMat1 HLtamTet1 HLmyrTri1 HLchoHof3 HLchoDid2 HLchoDid1 HLphaGym1 HLtriVul1 HLpseOcc1 HLpseCor1 HLthyCyn1 HLantFla1 HLsarHar2 HLdidVir1 HLgraAgi1 monDom5 HLphaCin1 HLvomUrs1 macEug2 HLnotEug3 HLospRuf1 HLmacGig1 HLmacFul1 HLgymLea1 HLpseCup1 HLtacAcu1 HLornAna3 -include topmed.ra alpha include gerp.ra alpha include crossTissueMaps.ra include problematic.ra # Brian's original experiment, April 2022 include hprcChain.ra alpha include hprcCoverage97.ra alpha # other HPRC experiments include hprcChainNet.ra # the hprcChainNet.ra replaces these two: # include hprcChains.ra alpha @@ -900,18 +899,18 @@ include assemblyTracks.ra include primates11way.ra alpha include pseudogenes.ra include recount3.ra alpha include long_read_transcripts.ra include mavedb.ra include vgpLiftOver.ra alpha include psuVsUcscChains.ra alpha -include varFreqs.ra alpha - include LCR.ra alpha + +include ancient.ra alpha