533cc89eb4febc78c9f8f104aed4523de06bf85b max Fri Jun 19 08:58:02 2026 -0700 varFreqs: fix numeric filter rendering and trim per-cohort filters #Preview2 week - bugs introduced now will need a build patch to fix The Affected/Background track config pages showed none of the AF/AC/AN filters. hgTrackUi only discovers a numeric filter from a filter.<field> (or <field>Filter) setting (FILTER_NUMBER_WILDCARD in bigBedFilter.h); the generated fragment had only filterByRange.<field>/filterLimits.<field> for those fields, so they were silently dropped. vcfToBigBed.py now emits filter.<field> (a full-range default, so nothing is filtered by default) plus filterLimits for every numeric filter. That made ~140 filters appear, which overwhelmed the config page, so the per-database and per-population AF/AC filters are emitted commented out (range_filter enabled=False) and can be re-enabled individually by removing the leading "# ". Only the global filters remain active: variant type, consequence, the affected/case and background AF/AC/AN summaries, the affected/case-cohort and background-source selectors, the in-affected flag, and the length filters. The per-cohort data columns are unchanged in the bigBed and still show on the details page. No bigBed rebuild needed; this is trackDb-only. refs #36642 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index bd0aef5a8e1..f056f6c92b0 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -35,328 +35,606 @@ filterByRange.refLen on filterLabel.refLen Reference Length filter.refLen 1:28037 filterLimits.refLen 1:28037 filterByRange.altLen on filterLabel.altLen Alternate Length filter.altLen 1:6294 filterLimits.altLen 1:6294 filterByRange.varLen on filterLabel.varLen Length Change filter.varLen -28036:6293 filterLimits.varLen -28036:6293 # Affected/case frequency summary filterByRange.affectedAF on filterLabel.affectedAF Affected/case AF (pooled) + filter.affectedAF 0:1 filterLimits.affectedAF 0:1 filterByRange.affectedAC on filterLabel.affectedAC Affected/case AC + filter.affectedAC 0:500000 + filterLimits.affectedAC 0:500000 filterByRange.affectedAN on filterLabel.affectedAN Affected/case AN (pool denominator) + filter.affectedAN 0:500000 + filterLimits.affectedAN 0:500000 # Background (population + unaffected) frequency summary filterByRange.backgroundAF on filterLabel.backgroundAF Background AF (pooled) + filter.backgroundAF 0:1 filterLimits.backgroundAF 0:1 filterByRange.backgroundAC on filterLabel.backgroundAC Background AC (population + unaffected) + filter.backgroundAC 0:5000000 + filterLimits.backgroundAC 0:5000000 filterByRange.backgroundAN on filterLabel.backgroundAN Background AN (pool denominator) + filter.backgroundAN 0:5000000 + filterLimits.backgroundAN 0:5000000 # Affected/case membership flag filterByRange.inAffected on filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no) filter.inAffected 0:1 filterLimits.inAffected 0:1 - # Per-database AF filters - filterByRange.AllOfUsAF on - filterLabel.AllOfUsAF AllOfUs AF - filterByRange.SPARKAF on - filterLabel.SPARKAF SFARI SPARK WES AF - filterByRange.SFARI_WGSAF on - filterLabel.SFARI_WGSAF SFARI SPARK WGS AF - filterByRange.GenomeAsiaAF on - filterLabel.GenomeAsiaAF GenomeAsia SNVs AF - filterByRange.GenomeAsiaIndelAF on - filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF - filterByRange.NPMAF on - filterLabel.NPMAF NPM Singapore AF - filterByRange.KOVAAF on - filterLabel.KOVAAF KOVA Korea AF - filterByRange.ToMMoAF on - filterLabel.ToMMoAF ToMMo Japan AF - filterByRange.FinnGenAF on - filterLabel.FinnGenAF FinnGen Finland AF - filterByRange.SaudiAF on - filterLabel.SaudiAF Saudi AF - filterByRange.SweGenAF on - filterLabel.SweGenAF SweGen Sweden AF - filterByRange.TOPMedAF on - filterLabel.TOPMedAF TOPMed AF - filterByRange.ABraOMAF on - filterLabel.ABraOMAF ABraOM Brazil AF - filterByRange.ALFAAF on - filterLabel.ALFAAF ALFA AF - filterByRange.MGRBAF on - filterLabel.MGRBAF MGRB Australia AF - filterByRange.HRCAF on - filterLabel.HRCAF HRC AF - filterByRange.SGDPAF on - filterLabel.SGDPAF SGDP AF - filterByRange.HGDP1kGAF on - filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF - filterByRange.GREGoRAF on - filterLabel.GREGoRAF GREGoR AF - filterByRange.SCHEMAAF on - filterLabel.SCHEMAAF SCHEMA AF - filterByRange.GA4KAF on - filterLabel.GA4KAF GA4K PacBio LR AF - filterByRange.CoLoRSdbAF on - filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF - filterByRange.SVatalogAF on - filterLabel.SVatalogAF SVatalog 101 10XG SR AF - filterByRange.Tishkoff180AF on - filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF - filterByRange.WBBCAF on - filterLabel.WBBCAF WBBC China AF - filterByRange.ChinaMAPAF on - filterLabel.ChinaMAPAF China ChinaMAP AF - filterByRange.GenomeIndiaAF on - filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF - filterByRange.GoNLAF on - filterLabel.GoNLAF GoNL Netherlands ~13x SR AF - # Per-database AC filters - filterByRange.AllOfUsAC on - filterLabel.AllOfUsAC AllOfUs AC - filterByRange.SPARKAC on - filterLabel.SPARKAC SFARI SPARK WES AC - filterByRange.SFARI_WGSAC on - filterLabel.SFARI_WGSAC SFARI SPARK WGS AC - filterByRange.GenomeAsiaAC on - filterLabel.GenomeAsiaAC GenomeAsia SNVs AC - filterByRange.GenomeAsiaIndelAC on - filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC - filterByRange.NPMAC on - filterLabel.NPMAC NPM Singapore AC - filterByRange.KOVAAC on - filterLabel.KOVAAC KOVA Korea AC - filterByRange.ToMMoAC on - filterLabel.ToMMoAC ToMMo Japan AC - filterByRange.FinnGenAC on - filterLabel.FinnGenAC FinnGen Finland AC - filterByRange.SaudiAC on - filterLabel.SaudiAC Saudi AC - filterByRange.SweGenAC on - filterLabel.SweGenAC SweGen Sweden AC - filterByRange.TOPMedAC on - filterLabel.TOPMedAC TOPMed AC - filterByRange.ABraOMAC on - filterLabel.ABraOMAC ABraOM Brazil AC - filterByRange.ALFAAC on - filterLabel.ALFAAC ALFA AC - filterByRange.MGRBAC on - filterLabel.MGRBAC MGRB Australia AC - filterByRange.HRCAC on - filterLabel.HRCAC HRC AC - filterByRange.SGDPAC on - filterLabel.SGDPAC SGDP AC - filterByRange.HGDP1kGAC on - filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC - filterByRange.GREGoRAC on - filterLabel.GREGoRAC GREGoR AC - filterByRange.SCHEMAAC on - filterLabel.SCHEMAAC SCHEMA AC - filterByRange.GA4KAC on - filterLabel.GA4KAC GA4K PacBio LR AC - filterByRange.CoLoRSdbAC on - filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC - filterByRange.SVatalogAC on - filterLabel.SVatalogAC SVatalog 101 10XG SR AC - filterByRange.Tishkoff180AC on - filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC - filterByRange.WBBCAC on - filterLabel.WBBCAC WBBC China AC - filterByRange.ChinaMAPAC on - filterLabel.ChinaMAPAC China ChinaMAP AC - filterByRange.GenomeIndiaAC on - filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC - filterByRange.GoNLAC on - filterLabel.GoNLAC GoNL Netherlands ~13x SR AC - # Population-specific AF filters + # Per-database AF filters (commented out: re-enable as needed) + # filterByRange.AllOfUsAF on + # filterLabel.AllOfUsAF AllOfUs AF + # filter.AllOfUsAF 0:1 + # filterLimits.AllOfUsAF 0:1 + # filterByRange.SPARKAF on + # filterLabel.SPARKAF SFARI SPARK WES AF + # filter.SPARKAF 0:1 + # filterLimits.SPARKAF 0:1 + # filterByRange.SFARI_WGSAF on + # filterLabel.SFARI_WGSAF SFARI SPARK WGS AF + # filter.SFARI_WGSAF 0:1 + # filterLimits.SFARI_WGSAF 0:1 + # filterByRange.GenomeAsiaAF on + # filterLabel.GenomeAsiaAF GenomeAsia SNVs AF + # filter.GenomeAsiaAF 0:1 + # filterLimits.GenomeAsiaAF 0:1 + # filterByRange.GenomeAsiaIndelAF on + # filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF + # filter.GenomeAsiaIndelAF 0:1 + # filterLimits.GenomeAsiaIndelAF 0:1 + # filterByRange.NPMAF on + # filterLabel.NPMAF NPM Singapore AF + # filter.NPMAF 0:1 + # filterLimits.NPMAF 0:1 + # filterByRange.KOVAAF on + # filterLabel.KOVAAF KOVA Korea AF + # filter.KOVAAF 0:1 + # filterLimits.KOVAAF 0:1 + # filterByRange.ToMMoAF on + # filterLabel.ToMMoAF ToMMo Japan AF + # filter.ToMMoAF 0:1 + # filterLimits.ToMMoAF 0:1 + # filterByRange.FinnGenAF on + # filterLabel.FinnGenAF FinnGen Finland AF + # filter.FinnGenAF 0:1 + # filterLimits.FinnGenAF 0:1 + # filterByRange.SaudiAF on + # filterLabel.SaudiAF Saudi AF + # filter.SaudiAF 0:1 + # filterLimits.SaudiAF 0:1 + # filterByRange.SweGenAF on + # filterLabel.SweGenAF SweGen Sweden AF + # filter.SweGenAF 0:1 + # filterLimits.SweGenAF 0:1 + # filterByRange.TOPMedAF on + # filterLabel.TOPMedAF TOPMed AF + # filter.TOPMedAF 0:1 + # filterLimits.TOPMedAF 0:1 + # filterByRange.ABraOMAF on + # filterLabel.ABraOMAF ABraOM Brazil AF + # filter.ABraOMAF 0:1 + # filterLimits.ABraOMAF 0:1 + # filterByRange.ALFAAF on + # filterLabel.ALFAAF ALFA AF + # filter.ALFAAF 0:1 + # filterLimits.ALFAAF 0:1 + # filterByRange.MGRBAF on + # filterLabel.MGRBAF MGRB Australia AF + # filter.MGRBAF 0:1 + # filterLimits.MGRBAF 0:1 + # filterByRange.HRCAF on + # filterLabel.HRCAF HRC AF + # filter.HRCAF 0:1 + # filterLimits.HRCAF 0:1 + # filterByRange.SGDPAF on + # filterLabel.SGDPAF SGDP AF + # filter.SGDPAF 0:1 + # filterLimits.SGDPAF 0:1 + # filterByRange.HGDP1kGAF on + # filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF + # filter.HGDP1kGAF 0:1 + # filterLimits.HGDP1kGAF 0:1 + # filterByRange.GREGoRAF on + # filterLabel.GREGoRAF GREGoR AF + # filter.GREGoRAF 0:1 + # filterLimits.GREGoRAF 0:1 + # filterByRange.SCHEMAAF on + # filterLabel.SCHEMAAF SCHEMA AF + # filter.SCHEMAAF 0:1 + # filterLimits.SCHEMAAF 0:1 + # filterByRange.GA4KAF on + # filterLabel.GA4KAF GA4K PacBio LR AF + # filter.GA4KAF 0:1 + # filterLimits.GA4KAF 0:1 + # filterByRange.CoLoRSdbAF on + # filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF + # filter.CoLoRSdbAF 0:1 + # filterLimits.CoLoRSdbAF 0:1 + # filterByRange.SVatalogAF on + # filterLabel.SVatalogAF SVatalog 101 10XG SR AF + # filter.SVatalogAF 0:1 + # filterLimits.SVatalogAF 0:1 + # filterByRange.Tishkoff180AF on + # filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF + # filter.Tishkoff180AF 0:1 + # filterLimits.Tishkoff180AF 0:1 + # filterByRange.WBBCAF on + # filterLabel.WBBCAF WBBC China AF + # filter.WBBCAF 0:1 + # filterLimits.WBBCAF 0:1 + # filterByRange.ChinaMAPAF on + # filterLabel.ChinaMAPAF China ChinaMAP AF + # filter.ChinaMAPAF 0:1 + # filterLimits.ChinaMAPAF 0:1 + # filterByRange.GenomeIndiaAF on + # filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF + # filter.GenomeIndiaAF 0:1 + # filterLimits.GenomeIndiaAF 0:1 + # filterByRange.GoNLAF on + # filterLabel.GoNLAF GoNL Netherlands ~13x SR AF + # filter.GoNLAF 0:1 + # filterLimits.GoNLAF 0:1 + # Per-database AC filters (commented out: re-enable as needed) + # filterByRange.AllOfUsAC on + # filterLabel.AllOfUsAC AllOfUs AC + # filter.AllOfUsAC 0:2000000 + # filterLimits.AllOfUsAC 0:2000000 + # filterByRange.SPARKAC on + # filterLabel.SPARKAC SFARI SPARK WES AC + # filter.SPARKAC 0:2000000 + # filterLimits.SPARKAC 0:2000000 + # filterByRange.SFARI_WGSAC on + # filterLabel.SFARI_WGSAC SFARI SPARK WGS AC + # filter.SFARI_WGSAC 0:2000000 + # filterLimits.SFARI_WGSAC 0:2000000 + # filterByRange.GenomeAsiaAC on + # filterLabel.GenomeAsiaAC GenomeAsia SNVs AC + # filter.GenomeAsiaAC 0:2000000 + # filterLimits.GenomeAsiaAC 0:2000000 + # filterByRange.GenomeAsiaIndelAC on + # filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC + # filter.GenomeAsiaIndelAC 0:2000000 + # filterLimits.GenomeAsiaIndelAC 0:2000000 + # filterByRange.NPMAC on + # filterLabel.NPMAC NPM Singapore AC + # filter.NPMAC 0:2000000 + # filterLimits.NPMAC 0:2000000 + # filterByRange.KOVAAC on + # filterLabel.KOVAAC KOVA Korea AC + # filter.KOVAAC 0:2000000 + # filterLimits.KOVAAC 0:2000000 + # filterByRange.ToMMoAC on + # filterLabel.ToMMoAC ToMMo Japan AC + # filter.ToMMoAC 0:2000000 + # filterLimits.ToMMoAC 0:2000000 + # filterByRange.FinnGenAC on + # filterLabel.FinnGenAC FinnGen Finland AC + # filter.FinnGenAC 0:2000000 + # filterLimits.FinnGenAC 0:2000000 + # filterByRange.SaudiAC on + # filterLabel.SaudiAC Saudi AC + # filter.SaudiAC 0:2000000 + # filterLimits.SaudiAC 0:2000000 + # filterByRange.SweGenAC on + # filterLabel.SweGenAC SweGen Sweden AC + # filter.SweGenAC 0:2000000 + # filterLimits.SweGenAC 0:2000000 + # filterByRange.TOPMedAC on + # filterLabel.TOPMedAC TOPMed AC + # filter.TOPMedAC 0:2000000 + # filterLimits.TOPMedAC 0:2000000 + # filterByRange.ABraOMAC on + # filterLabel.ABraOMAC ABraOM Brazil AC + # filter.ABraOMAC 0:2000000 + # filterLimits.ABraOMAC 0:2000000 + # filterByRange.ALFAAC on + # filterLabel.ALFAAC ALFA AC + # filter.ALFAAC 0:2000000 + # filterLimits.ALFAAC 0:2000000 + # filterByRange.MGRBAC on + # filterLabel.MGRBAC MGRB Australia AC + # filter.MGRBAC 0:2000000 + # filterLimits.MGRBAC 0:2000000 + # filterByRange.HRCAC on + # filterLabel.HRCAC HRC AC + # filter.HRCAC 0:2000000 + # filterLimits.HRCAC 0:2000000 + # filterByRange.SGDPAC on + # filterLabel.SGDPAC SGDP AC + # filter.SGDPAC 0:2000000 + # filterLimits.SGDPAC 0:2000000 + # filterByRange.HGDP1kGAC on + # filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC + # filter.HGDP1kGAC 0:2000000 + # filterLimits.HGDP1kGAC 0:2000000 + # filterByRange.GREGoRAC on + # filterLabel.GREGoRAC GREGoR AC + # filter.GREGoRAC 0:2000000 + # filterLimits.GREGoRAC 0:2000000 + # filterByRange.SCHEMAAC on + # filterLabel.SCHEMAAC SCHEMA AC + # filter.SCHEMAAC 0:2000000 + # filterLimits.SCHEMAAC 0:2000000 + # filterByRange.GA4KAC on + # filterLabel.GA4KAC GA4K PacBio LR AC + # filter.GA4KAC 0:2000000 + # filterLimits.GA4KAC 0:2000000 + # filterByRange.CoLoRSdbAC on + # filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC + # filter.CoLoRSdbAC 0:2000000 + # filterLimits.CoLoRSdbAC 0:2000000 + # filterByRange.SVatalogAC on + # filterLabel.SVatalogAC SVatalog 101 10XG SR AC + # filter.SVatalogAC 0:2000000 + # filterLimits.SVatalogAC 0:2000000 + # filterByRange.Tishkoff180AC on + # filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC + # filter.Tishkoff180AC 0:2000000 + # filterLimits.Tishkoff180AC 0:2000000 + # filterByRange.WBBCAC on + # filterLabel.WBBCAC WBBC China AC + # filter.WBBCAC 0:2000000 + # filterLimits.WBBCAC 0:2000000 + # filterByRange.ChinaMAPAC on + # filterLabel.ChinaMAPAC China ChinaMAP AC + # filter.ChinaMAPAC 0:2000000 + # filterLimits.ChinaMAPAC 0:2000000 + # filterByRange.GenomeIndiaAC on + # filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC + # filter.GenomeIndiaAC 0:2000000 + # filterLimits.GenomeIndiaAC 0:2000000 + # filterByRange.GoNLAC on + # filterLabel.GoNLAC GoNL Netherlands ~13x SR AC + # filter.GoNLAC 0:2000000 + # filterLimits.GoNLAC 0:2000000 + # Population-specific AF/AC filters (commented out: re-enable as needed) # AllOfUs populations - filterByRange.AllOfUsAF_AFR on - filterLabel.AllOfUsAF_AFR AllOfUs African AF - filterByRange.AllOfUsAF_AMR on - filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF - filterByRange.AllOfUsAF_EAS on - filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF - filterByRange.AllOfUsAF_EUR on - filterLabel.AllOfUsAF_EUR AllOfUs European AF - filterByRange.AllOfUsAF_OCE on - filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF - filterByRange.AllOfUsAF_SAS on - filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF - filterByRange.AllOfUsAC_AFR on - filterLabel.AllOfUsAC_AFR AllOfUs African AC - filterByRange.AllOfUsAC_AMR on - filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC - filterByRange.AllOfUsAC_EAS on - filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC - filterByRange.AllOfUsAC_EUR on - filterLabel.AllOfUsAC_EUR AllOfUs European AC - filterByRange.AllOfUsAC_OCE on - filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC - filterByRange.AllOfUsAC_SAS on - filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC + # filterByRange.AllOfUsAF_AFR on + # filterLabel.AllOfUsAF_AFR AllOfUs African AF + # filter.AllOfUsAF_AFR 0:1 + # filterLimits.AllOfUsAF_AFR 0:1 + # filterByRange.AllOfUsAF_AMR on + # filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF + # filter.AllOfUsAF_AMR 0:1 + # filterLimits.AllOfUsAF_AMR 0:1 + # filterByRange.AllOfUsAF_EAS on + # filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF + # filter.AllOfUsAF_EAS 0:1 + # filterLimits.AllOfUsAF_EAS 0:1 + # filterByRange.AllOfUsAF_EUR on + # filterLabel.AllOfUsAF_EUR AllOfUs European AF + # filter.AllOfUsAF_EUR 0:1 + # filterLimits.AllOfUsAF_EUR 0:1 + # filterByRange.AllOfUsAF_OCE on + # filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF + # filter.AllOfUsAF_OCE 0:1 + # filterLimits.AllOfUsAF_OCE 0:1 + # filterByRange.AllOfUsAF_SAS on + # filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF + # filter.AllOfUsAF_SAS 0:1 + # filterLimits.AllOfUsAF_SAS 0:1 + # filterByRange.AllOfUsAC_AFR on + # filterLabel.AllOfUsAC_AFR AllOfUs African AC + # filter.AllOfUsAC_AFR 0:2000000 + # filterLimits.AllOfUsAC_AFR 0:2000000 + # filterByRange.AllOfUsAC_AMR on + # filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC + # filter.AllOfUsAC_AMR 0:2000000 + # filterLimits.AllOfUsAC_AMR 0:2000000 + # filterByRange.AllOfUsAC_EAS on + # filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC + # filter.AllOfUsAC_EAS 0:2000000 + # filterLimits.AllOfUsAC_EAS 0:2000000 + # filterByRange.AllOfUsAC_EUR on + # filterLabel.AllOfUsAC_EUR AllOfUs European AC + # filter.AllOfUsAC_EUR 0:2000000 + # filterLimits.AllOfUsAC_EUR 0:2000000 + # filterByRange.AllOfUsAC_OCE on + # filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC + # filter.AllOfUsAC_OCE 0:2000000 + # filterLimits.AllOfUsAC_OCE 0:2000000 + # filterByRange.AllOfUsAC_SAS on + # filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC + # filter.AllOfUsAC_SAS 0:2000000 + # filterLimits.AllOfUsAC_SAS 0:2000000 # SFARI SPARK WES populations - filterByRange.SPARKAF_AUT on - filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF - filterByRange.SPARKAF_NON_AUT on - filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF - filterByRange.SPARKAC_AUT on - filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC - filterByRange.SPARKAC_NON_AUT on - filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC + # filterByRange.SPARKAF_AUT on + # filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF + # filter.SPARKAF_AUT 0:1 + # filterLimits.SPARKAF_AUT 0:1 + # filterByRange.SPARKAF_NON_AUT on + # filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF + # filter.SPARKAF_NON_AUT 0:1 + # filterLimits.SPARKAF_NON_AUT 0:1 + # filterByRange.SPARKAC_AUT on + # filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC + # filter.SPARKAC_AUT 0:2000000 + # filterLimits.SPARKAC_AUT 0:2000000 + # filterByRange.SPARKAC_NON_AUT on + # filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC + # filter.SPARKAC_NON_AUT 0:2000000 + # filterLimits.SPARKAC_NON_AUT 0:2000000 # SFARI SPARK WGS populations - filterByRange.SFARI_WGSAF_AUT on - filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF - filterByRange.SFARI_WGSAF_NON_AUT on - filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF - filterByRange.SFARI_WGSAC_AUT on - filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC - filterByRange.SFARI_WGSAC_NON_AUT on - filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC + # filterByRange.SFARI_WGSAF_AUT on + # filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF + # filter.SFARI_WGSAF_AUT 0:1 + # filterLimits.SFARI_WGSAF_AUT 0:1 + # filterByRange.SFARI_WGSAF_NON_AUT on + # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF + # filter.SFARI_WGSAF_NON_AUT 0:1 + # filterLimits.SFARI_WGSAF_NON_AUT 0:1 + # filterByRange.SFARI_WGSAC_AUT on + # filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC + # filter.SFARI_WGSAC_AUT 0:2000000 + # filterLimits.SFARI_WGSAC_AUT 0:2000000 + # filterByRange.SFARI_WGSAC_NON_AUT on + # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC + # filter.SFARI_WGSAC_NON_AUT 0:2000000 + # filterLimits.SFARI_WGSAC_NON_AUT 0:2000000 # GenomeAsia SNVs populations - filterByRange.GenomeAsiaAF_NEA on - filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF - filterByRange.GenomeAsiaAF_SEA on - filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF - filterByRange.GenomeAsiaAF_SAS on - filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF - filterByRange.GenomeAsiaAF_OCE on - filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF - filterByRange.GenomeAsiaAF_AMR on - filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF - filterByRange.GenomeAsiaAF_AFR on - filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF - filterByRange.GenomeAsiaAF_WER on - filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF - filterByRange.GenomeAsiaAC_NEA on - filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC - filterByRange.GenomeAsiaAC_SEA on - filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC - filterByRange.GenomeAsiaAC_SAS on - filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC - filterByRange.GenomeAsiaAC_OCE on - filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC - filterByRange.GenomeAsiaAC_AMR on - filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC - filterByRange.GenomeAsiaAC_AFR on - filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC - filterByRange.GenomeAsiaAC_WER on - filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC + # filterByRange.GenomeAsiaAF_NEA on + # filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF + # filter.GenomeAsiaAF_NEA 0:1 + # filterLimits.GenomeAsiaAF_NEA 0:1 + # filterByRange.GenomeAsiaAF_SEA on + # filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF + # filter.GenomeAsiaAF_SEA 0:1 + # filterLimits.GenomeAsiaAF_SEA 0:1 + # filterByRange.GenomeAsiaAF_SAS on + # filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF + # filter.GenomeAsiaAF_SAS 0:1 + # filterLimits.GenomeAsiaAF_SAS 0:1 + # filterByRange.GenomeAsiaAF_OCE on + # filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF + # filter.GenomeAsiaAF_OCE 0:1 + # filterLimits.GenomeAsiaAF_OCE 0:1 + # filterByRange.GenomeAsiaAF_AMR on + # filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF + # filter.GenomeAsiaAF_AMR 0:1 + # filterLimits.GenomeAsiaAF_AMR 0:1 + # filterByRange.GenomeAsiaAF_AFR on + # filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF + # filter.GenomeAsiaAF_AFR 0:1 + # filterLimits.GenomeAsiaAF_AFR 0:1 + # filterByRange.GenomeAsiaAF_WER on + # filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF + # filter.GenomeAsiaAF_WER 0:1 + # filterLimits.GenomeAsiaAF_WER 0:1 + # filterByRange.GenomeAsiaAC_NEA on + # filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC + # filter.GenomeAsiaAC_NEA 0:2000000 + # filterLimits.GenomeAsiaAC_NEA 0:2000000 + # filterByRange.GenomeAsiaAC_SEA on + # filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC + # filter.GenomeAsiaAC_SEA 0:2000000 + # filterLimits.GenomeAsiaAC_SEA 0:2000000 + # filterByRange.GenomeAsiaAC_SAS on + # filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC + # filter.GenomeAsiaAC_SAS 0:2000000 + # filterLimits.GenomeAsiaAC_SAS 0:2000000 + # filterByRange.GenomeAsiaAC_OCE on + # filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC + # filter.GenomeAsiaAC_OCE 0:2000000 + # filterLimits.GenomeAsiaAC_OCE 0:2000000 + # filterByRange.GenomeAsiaAC_AMR on + # filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC + # filter.GenomeAsiaAC_AMR 0:2000000 + # filterLimits.GenomeAsiaAC_AMR 0:2000000 + # filterByRange.GenomeAsiaAC_AFR on + # filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC + # filter.GenomeAsiaAC_AFR 0:2000000 + # filterLimits.GenomeAsiaAC_AFR 0:2000000 + # filterByRange.GenomeAsiaAC_WER on + # filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC + # filter.GenomeAsiaAC_WER 0:2000000 + # filterLimits.GenomeAsiaAC_WER 0:2000000 # NPM Singapore populations - filterByRange.NPMAF_Chinese on - filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF - filterByRange.NPMAF_Malay on - filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF - filterByRange.NPMAF_Indian on - filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF - filterByRange.NPMAC_Chinese on - filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC - filterByRange.NPMAC_Malay on - filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC - filterByRange.NPMAC_Indian on - filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC + # filterByRange.NPMAF_Chinese on + # filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF + # filter.NPMAF_Chinese 0:1 + # filterLimits.NPMAF_Chinese 0:1 + # filterByRange.NPMAF_Malay on + # filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF + # filter.NPMAF_Malay 0:1 + # filterLimits.NPMAF_Malay 0:1 + # filterByRange.NPMAF_Indian on + # filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF + # filter.NPMAF_Indian 0:1 + # filterLimits.NPMAF_Indian 0:1 + # filterByRange.NPMAC_Chinese on + # filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC + # filter.NPMAC_Chinese 0:2000000 + # filterLimits.NPMAC_Chinese 0:2000000 + # filterByRange.NPMAC_Malay on + # filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC + # filter.NPMAC_Malay 0:2000000 + # filterLimits.NPMAC_Malay 0:2000000 + # filterByRange.NPMAC_Indian on + # filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC + # filter.NPMAC_Indian 0:2000000 + # filterLimits.NPMAC_Indian 0:2000000 # gnomAD HGDP+1kG populations - filterByRange.HGDP1kGAF_afr on - filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF - filterByRange.HGDP1kGAF_ami on - filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF - filterByRange.HGDP1kGAF_amr on - filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF - filterByRange.HGDP1kGAF_asj on - filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF - filterByRange.HGDP1kGAF_eas on - filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF - filterByRange.HGDP1kGAF_fin on - filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF - filterByRange.HGDP1kGAF_mid on - filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF - filterByRange.HGDP1kGAF_nfe on - filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF - filterByRange.HGDP1kGAF_oth on - filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF - filterByRange.HGDP1kGAF_sas on - filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF - filterByRange.HGDP1kGAC_afr on - filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC - filterByRange.HGDP1kGAC_ami on - filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC - filterByRange.HGDP1kGAC_amr on - filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC - filterByRange.HGDP1kGAC_asj on - filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC - filterByRange.HGDP1kGAC_eas on - filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC - filterByRange.HGDP1kGAC_fin on - filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC - filterByRange.HGDP1kGAC_mid on - filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC - filterByRange.HGDP1kGAC_nfe on - filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC - filterByRange.HGDP1kGAC_oth on - filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC - filterByRange.HGDP1kGAC_sas on - filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC + # filterByRange.HGDP1kGAF_afr on + # filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF + # filter.HGDP1kGAF_afr 0:1 + # filterLimits.HGDP1kGAF_afr 0:1 + # filterByRange.HGDP1kGAF_ami on + # filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF + # filter.HGDP1kGAF_ami 0:1 + # filterLimits.HGDP1kGAF_ami 0:1 + # filterByRange.HGDP1kGAF_amr on + # filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF + # filter.HGDP1kGAF_amr 0:1 + # filterLimits.HGDP1kGAF_amr 0:1 + # filterByRange.HGDP1kGAF_asj on + # filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF + # filter.HGDP1kGAF_asj 0:1 + # filterLimits.HGDP1kGAF_asj 0:1 + # filterByRange.HGDP1kGAF_eas on + # filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF + # filter.HGDP1kGAF_eas 0:1 + # filterLimits.HGDP1kGAF_eas 0:1 + # filterByRange.HGDP1kGAF_fin on + # filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF + # filter.HGDP1kGAF_fin 0:1 + # filterLimits.HGDP1kGAF_fin 0:1 + # filterByRange.HGDP1kGAF_mid on + # filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF + # filter.HGDP1kGAF_mid 0:1 + # filterLimits.HGDP1kGAF_mid 0:1 + # filterByRange.HGDP1kGAF_nfe on + # filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF + # filter.HGDP1kGAF_nfe 0:1 + # filterLimits.HGDP1kGAF_nfe 0:1 + # filterByRange.HGDP1kGAF_oth on + # filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF + # filter.HGDP1kGAF_oth 0:1 + # filterLimits.HGDP1kGAF_oth 0:1 + # filterByRange.HGDP1kGAF_sas on + # filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF + # filter.HGDP1kGAF_sas 0:1 + # filterLimits.HGDP1kGAF_sas 0:1 + # filterByRange.HGDP1kGAC_afr on + # filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC + # filter.HGDP1kGAC_afr 0:2000000 + # filterLimits.HGDP1kGAC_afr 0:2000000 + # filterByRange.HGDP1kGAC_ami on + # filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC + # filter.HGDP1kGAC_ami 0:2000000 + # filterLimits.HGDP1kGAC_ami 0:2000000 + # filterByRange.HGDP1kGAC_amr on + # filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC + # filter.HGDP1kGAC_amr 0:2000000 + # filterLimits.HGDP1kGAC_amr 0:2000000 + # filterByRange.HGDP1kGAC_asj on + # filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC + # filter.HGDP1kGAC_asj 0:2000000 + # filterLimits.HGDP1kGAC_asj 0:2000000 + # filterByRange.HGDP1kGAC_eas on + # filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC + # filter.HGDP1kGAC_eas 0:2000000 + # filterLimits.HGDP1kGAC_eas 0:2000000 + # filterByRange.HGDP1kGAC_fin on + # filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC + # filter.HGDP1kGAC_fin 0:2000000 + # filterLimits.HGDP1kGAC_fin 0:2000000 + # filterByRange.HGDP1kGAC_mid on + # filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC + # filter.HGDP1kGAC_mid 0:2000000 + # filterLimits.HGDP1kGAC_mid 0:2000000 + # filterByRange.HGDP1kGAC_nfe on + # filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC + # filter.HGDP1kGAC_nfe 0:2000000 + # filterLimits.HGDP1kGAC_nfe 0:2000000 + # filterByRange.HGDP1kGAC_oth on + # filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC + # filter.HGDP1kGAC_oth 0:2000000 + # filterLimits.HGDP1kGAC_oth 0:2000000 + # filterByRange.HGDP1kGAC_sas on + # filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC + # filter.HGDP1kGAC_sas 0:2000000 + # filterLimits.HGDP1kGAC_sas 0:2000000 # GREGoR populations - filterByRange.GREGoRAF_AFF on - filterLabel.GREGoRAF_AFF GREGoR Affected AF - filterByRange.GREGoRAF_UNA on - filterLabel.GREGoRAF_UNA GREGoR Unaffected AF - filterByRange.GREGoRAF_UNK on - filterLabel.GREGoRAF_UNK GREGoR Unknown AF - filterByRange.GREGoRAC_AFF on - filterLabel.GREGoRAC_AFF GREGoR Affected AC - filterByRange.GREGoRAC_UNA on - filterLabel.GREGoRAC_UNA GREGoR Unaffected AC - filterByRange.GREGoRAC_UNK on - filterLabel.GREGoRAC_UNK GREGoR Unknown AC + # filterByRange.GREGoRAF_AFF on + # filterLabel.GREGoRAF_AFF GREGoR Affected AF + # filter.GREGoRAF_AFF 0:1 + # filterLimits.GREGoRAF_AFF 0:1 + # filterByRange.GREGoRAF_UNA on + # filterLabel.GREGoRAF_UNA GREGoR Unaffected AF + # filter.GREGoRAF_UNA 0:1 + # filterLimits.GREGoRAF_UNA 0:1 + # filterByRange.GREGoRAF_UNK on + # filterLabel.GREGoRAF_UNK GREGoR Unknown AF + # filter.GREGoRAF_UNK 0:1 + # filterLimits.GREGoRAF_UNK 0:1 + # filterByRange.GREGoRAC_AFF on + # filterLabel.GREGoRAC_AFF GREGoR Affected AC + # filter.GREGoRAC_AFF 0:2000000 + # filterLimits.GREGoRAC_AFF 0:2000000 + # filterByRange.GREGoRAC_UNA on + # filterLabel.GREGoRAC_UNA GREGoR Unaffected AC + # filter.GREGoRAC_UNA 0:2000000 + # filterLimits.GREGoRAC_UNA 0:2000000 + # filterByRange.GREGoRAC_UNK on + # filterLabel.GREGoRAC_UNK GREGoR Unknown AC + # filter.GREGoRAC_UNK 0:2000000 + # filterLimits.GREGoRAC_UNK 0:2000000 # SCHEMA populations - filterByRange.SCHEMAAF_CASE on - filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF - filterByRange.SCHEMAAF_CTRL on - filterLabel.SCHEMAAF_CTRL SCHEMA Control AF - filterByRange.SCHEMAAC_CASE on - filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC - filterByRange.SCHEMAAC_CTRL on - filterLabel.SCHEMAAC_CTRL SCHEMA Control AC + # filterByRange.SCHEMAAF_CASE on + # filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF + # filter.SCHEMAAF_CASE 0:1 + # filterLimits.SCHEMAAF_CASE 0:1 + # filterByRange.SCHEMAAF_CTRL on + # filterLabel.SCHEMAAF_CTRL SCHEMA Control AF + # filter.SCHEMAAF_CTRL 0:1 + # filterLimits.SCHEMAAF_CTRL 0:1 + # filterByRange.SCHEMAAC_CASE on + # filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC + # filter.SCHEMAAC_CASE 0:2000000 + # filterLimits.SCHEMAAC_CASE 0:2000000 + # filterByRange.SCHEMAAC_CTRL on + # filterLabel.SCHEMAAC_CTRL SCHEMA Control AC + # filter.SCHEMAAC_CTRL 0:2000000 + # filterLimits.SCHEMAAC_CTRL 0:2000000 # WBBC China populations - filterByRange.WBBCAF_North on - filterLabel.WBBCAF_North WBBC China North Han AF - filterByRange.WBBCAF_Central on - filterLabel.WBBCAF_Central WBBC China Central Han AF - filterByRange.WBBCAF_South on - filterLabel.WBBCAF_South WBBC China South Han AF - filterByRange.WBBCAF_Lingnan on - filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF - filterByRange.WBBCAC_North on - filterLabel.WBBCAC_North WBBC China North Han AC - filterByRange.WBBCAC_Central on - filterLabel.WBBCAC_Central WBBC China Central Han AC - filterByRange.WBBCAC_South on - filterLabel.WBBCAC_South WBBC China South Han AC - filterByRange.WBBCAC_Lingnan on - filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC + # filterByRange.WBBCAF_North on + # filterLabel.WBBCAF_North WBBC China North Han AF + # filter.WBBCAF_North 0:1 + # filterLimits.WBBCAF_North 0:1 + # filterByRange.WBBCAF_Central on + # filterLabel.WBBCAF_Central WBBC China Central Han AF + # filter.WBBCAF_Central 0:1 + # filterLimits.WBBCAF_Central 0:1 + # filterByRange.WBBCAF_South on + # filterLabel.WBBCAF_South WBBC China South Han AF + # filter.WBBCAF_South 0:1 + # filterLimits.WBBCAF_South 0:1 + # filterByRange.WBBCAF_Lingnan on + # filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF + # filter.WBBCAF_Lingnan 0:1 + # filterLimits.WBBCAF_Lingnan 0:1 + # filterByRange.WBBCAC_North on + # filterLabel.WBBCAC_North WBBC China North Han AC + # filter.WBBCAC_North 0:2000000 + # filterLimits.WBBCAC_North 0:2000000 + # filterByRange.WBBCAC_Central on + # filterLabel.WBBCAC_Central WBBC China Central Han AC + # filter.WBBCAC_Central 0:2000000 + # filterLimits.WBBCAC_Central 0:2000000 + # filterByRange.WBBCAC_South on + # filterLabel.WBBCAC_South WBBC China South Han AC + # filter.WBBCAC_South 0:2000000 + # filterLimits.WBBCAC_South 0:2000000 + # filterByRange.WBBCAC_Lingnan on + # filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC + # filter.WBBCAC_Lingnan 0:2000000 + # filterLimits.WBBCAC_Lingnan 0:2000000 skipEmptyFields on track varFreqsBackground shortLabel Population reference longLabel SNV Frequencies: variants in ~1.5 million individuals from population cohorts and unaffected or control arms type bigBed 9 + parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/_background/varFreqsBackground.bb tableBrowser off visibility pack itemRgb on maxWindowToDraw 5000000 priority 0.1 mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Background AF:</b> ${backgroundAF}<br><b>Background AC/AN:</b> ${backgroundAC} / ${backgroundAN}<br><b>Sources:</b> ${backgroundSources}<br><b>Affected AF:</b> ${affectedAF} filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR @@ -375,328 +653,606 @@ filterByRange.refLen on filterLabel.refLen Reference Length filter.refLen 1:28037 filterLimits.refLen 1:28037 filterByRange.altLen on filterLabel.altLen Alternate Length filter.altLen 1:6294 filterLimits.altLen 1:6294 filterByRange.varLen on filterLabel.varLen Length Change filter.varLen -28036:6293 filterLimits.varLen -28036:6293 # Affected/case frequency summary filterByRange.affectedAF on filterLabel.affectedAF Affected/case AF (pooled) + filter.affectedAF 0:1 filterLimits.affectedAF 0:1 filterByRange.affectedAC on filterLabel.affectedAC Affected/case AC + filter.affectedAC 0:500000 + filterLimits.affectedAC 0:500000 filterByRange.affectedAN on filterLabel.affectedAN Affected/case AN (pool denominator) + filter.affectedAN 0:500000 + filterLimits.affectedAN 0:500000 # Background (population + unaffected) frequency summary filterByRange.backgroundAF on filterLabel.backgroundAF Background AF (pooled) + filter.backgroundAF 0:1 filterLimits.backgroundAF 0:1 filterByRange.backgroundAC on filterLabel.backgroundAC Background AC (population + unaffected) + filter.backgroundAC 0:5000000 + filterLimits.backgroundAC 0:5000000 filterByRange.backgroundAN on filterLabel.backgroundAN Background AN (pool denominator) + filter.backgroundAN 0:5000000 + filterLimits.backgroundAN 0:5000000 # Affected/case membership flag filterByRange.inAffected on filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no) filter.inAffected 0:1 filterLimits.inAffected 0:1 - # Per-database AF filters - filterByRange.AllOfUsAF on - filterLabel.AllOfUsAF AllOfUs AF - filterByRange.SPARKAF on - filterLabel.SPARKAF SFARI SPARK WES AF - filterByRange.SFARI_WGSAF on - filterLabel.SFARI_WGSAF SFARI SPARK WGS AF - filterByRange.GenomeAsiaAF on - filterLabel.GenomeAsiaAF GenomeAsia SNVs AF - filterByRange.GenomeAsiaIndelAF on - filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF - filterByRange.NPMAF on - filterLabel.NPMAF NPM Singapore AF - filterByRange.KOVAAF on - filterLabel.KOVAAF KOVA Korea AF - filterByRange.ToMMoAF on - filterLabel.ToMMoAF ToMMo Japan AF - filterByRange.FinnGenAF on - filterLabel.FinnGenAF FinnGen Finland AF - filterByRange.SaudiAF on - filterLabel.SaudiAF Saudi AF - filterByRange.SweGenAF on - filterLabel.SweGenAF SweGen Sweden AF - filterByRange.TOPMedAF on - filterLabel.TOPMedAF TOPMed AF - filterByRange.ABraOMAF on - filterLabel.ABraOMAF ABraOM Brazil AF - filterByRange.ALFAAF on - filterLabel.ALFAAF ALFA AF - filterByRange.MGRBAF on - filterLabel.MGRBAF MGRB Australia AF - filterByRange.HRCAF on - filterLabel.HRCAF HRC AF - filterByRange.SGDPAF on - filterLabel.SGDPAF SGDP AF - filterByRange.HGDP1kGAF on - filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF - filterByRange.GREGoRAF on - filterLabel.GREGoRAF GREGoR AF - filterByRange.SCHEMAAF on - filterLabel.SCHEMAAF SCHEMA AF - filterByRange.GA4KAF on - filterLabel.GA4KAF GA4K PacBio LR AF - filterByRange.CoLoRSdbAF on - filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF - filterByRange.SVatalogAF on - filterLabel.SVatalogAF SVatalog 101 10XG SR AF - filterByRange.Tishkoff180AF on - filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF - filterByRange.WBBCAF on - filterLabel.WBBCAF WBBC China AF - filterByRange.ChinaMAPAF on - filterLabel.ChinaMAPAF China ChinaMAP AF - filterByRange.GenomeIndiaAF on - filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF - filterByRange.GoNLAF on - filterLabel.GoNLAF GoNL Netherlands ~13x SR AF - # Per-database AC filters - filterByRange.AllOfUsAC on - filterLabel.AllOfUsAC AllOfUs AC - filterByRange.SPARKAC on - filterLabel.SPARKAC SFARI SPARK WES AC - filterByRange.SFARI_WGSAC on - filterLabel.SFARI_WGSAC SFARI SPARK WGS AC - filterByRange.GenomeAsiaAC on - filterLabel.GenomeAsiaAC GenomeAsia SNVs AC - filterByRange.GenomeAsiaIndelAC on - filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC - filterByRange.NPMAC on - filterLabel.NPMAC NPM Singapore AC - filterByRange.KOVAAC on - filterLabel.KOVAAC KOVA Korea AC - filterByRange.ToMMoAC on - filterLabel.ToMMoAC ToMMo Japan AC - filterByRange.FinnGenAC on - filterLabel.FinnGenAC FinnGen Finland AC - filterByRange.SaudiAC on - filterLabel.SaudiAC Saudi AC - filterByRange.SweGenAC on - filterLabel.SweGenAC SweGen Sweden AC - filterByRange.TOPMedAC on - filterLabel.TOPMedAC TOPMed AC - filterByRange.ABraOMAC on - filterLabel.ABraOMAC ABraOM Brazil AC - filterByRange.ALFAAC on - filterLabel.ALFAAC ALFA AC - filterByRange.MGRBAC on - filterLabel.MGRBAC MGRB Australia AC - filterByRange.HRCAC on - filterLabel.HRCAC HRC AC - filterByRange.SGDPAC on - filterLabel.SGDPAC SGDP AC - filterByRange.HGDP1kGAC on - filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC - filterByRange.GREGoRAC on - filterLabel.GREGoRAC GREGoR AC - filterByRange.SCHEMAAC on - filterLabel.SCHEMAAC SCHEMA AC - filterByRange.GA4KAC on - filterLabel.GA4KAC GA4K PacBio LR AC - filterByRange.CoLoRSdbAC on - filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC - filterByRange.SVatalogAC on - filterLabel.SVatalogAC SVatalog 101 10XG SR AC - filterByRange.Tishkoff180AC on - filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC - filterByRange.WBBCAC on - filterLabel.WBBCAC WBBC China AC - filterByRange.ChinaMAPAC on - filterLabel.ChinaMAPAC China ChinaMAP AC - filterByRange.GenomeIndiaAC on - filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC - filterByRange.GoNLAC on - filterLabel.GoNLAC GoNL Netherlands ~13x SR AC - # Population-specific AF filters + # Per-database AF filters (commented out: re-enable as needed) + # filterByRange.AllOfUsAF on + # filterLabel.AllOfUsAF AllOfUs AF + # filter.AllOfUsAF 0:1 + # filterLimits.AllOfUsAF 0:1 + # filterByRange.SPARKAF on + # filterLabel.SPARKAF SFARI SPARK WES AF + # filter.SPARKAF 0:1 + # filterLimits.SPARKAF 0:1 + # filterByRange.SFARI_WGSAF on + # filterLabel.SFARI_WGSAF SFARI SPARK WGS AF + # filter.SFARI_WGSAF 0:1 + # filterLimits.SFARI_WGSAF 0:1 + # filterByRange.GenomeAsiaAF on + # filterLabel.GenomeAsiaAF GenomeAsia SNVs AF + # filter.GenomeAsiaAF 0:1 + # filterLimits.GenomeAsiaAF 0:1 + # filterByRange.GenomeAsiaIndelAF on + # filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF + # filter.GenomeAsiaIndelAF 0:1 + # filterLimits.GenomeAsiaIndelAF 0:1 + # filterByRange.NPMAF on + # filterLabel.NPMAF NPM Singapore AF + # filter.NPMAF 0:1 + # filterLimits.NPMAF 0:1 + # filterByRange.KOVAAF on + # filterLabel.KOVAAF KOVA Korea AF + # filter.KOVAAF 0:1 + # filterLimits.KOVAAF 0:1 + # filterByRange.ToMMoAF on + # filterLabel.ToMMoAF ToMMo Japan AF + # filter.ToMMoAF 0:1 + # filterLimits.ToMMoAF 0:1 + # filterByRange.FinnGenAF on + # filterLabel.FinnGenAF FinnGen Finland AF + # filter.FinnGenAF 0:1 + # filterLimits.FinnGenAF 0:1 + # filterByRange.SaudiAF on + # filterLabel.SaudiAF Saudi AF + # filter.SaudiAF 0:1 + # filterLimits.SaudiAF 0:1 + # filterByRange.SweGenAF on + # filterLabel.SweGenAF SweGen Sweden AF + # filter.SweGenAF 0:1 + # filterLimits.SweGenAF 0:1 + # filterByRange.TOPMedAF on + # filterLabel.TOPMedAF TOPMed AF + # filter.TOPMedAF 0:1 + # filterLimits.TOPMedAF 0:1 + # filterByRange.ABraOMAF on + # filterLabel.ABraOMAF ABraOM Brazil AF + # filter.ABraOMAF 0:1 + # filterLimits.ABraOMAF 0:1 + # filterByRange.ALFAAF on + # filterLabel.ALFAAF ALFA AF + # filter.ALFAAF 0:1 + # filterLimits.ALFAAF 0:1 + # filterByRange.MGRBAF on + # filterLabel.MGRBAF MGRB Australia AF + # filter.MGRBAF 0:1 + # filterLimits.MGRBAF 0:1 + # filterByRange.HRCAF on + # filterLabel.HRCAF HRC AF + # filter.HRCAF 0:1 + # filterLimits.HRCAF 0:1 + # filterByRange.SGDPAF on + # filterLabel.SGDPAF SGDP AF + # filter.SGDPAF 0:1 + # filterLimits.SGDPAF 0:1 + # filterByRange.HGDP1kGAF on + # filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF + # filter.HGDP1kGAF 0:1 + # filterLimits.HGDP1kGAF 0:1 + # filterByRange.GREGoRAF on + # filterLabel.GREGoRAF GREGoR AF + # filter.GREGoRAF 0:1 + # filterLimits.GREGoRAF 0:1 + # filterByRange.SCHEMAAF on + # filterLabel.SCHEMAAF SCHEMA AF + # filter.SCHEMAAF 0:1 + # filterLimits.SCHEMAAF 0:1 + # filterByRange.GA4KAF on + # filterLabel.GA4KAF GA4K PacBio LR AF + # filter.GA4KAF 0:1 + # filterLimits.GA4KAF 0:1 + # filterByRange.CoLoRSdbAF on + # filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF + # filter.CoLoRSdbAF 0:1 + # filterLimits.CoLoRSdbAF 0:1 + # filterByRange.SVatalogAF on + # filterLabel.SVatalogAF SVatalog 101 10XG SR AF + # filter.SVatalogAF 0:1 + # filterLimits.SVatalogAF 0:1 + # filterByRange.Tishkoff180AF on + # filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF + # filter.Tishkoff180AF 0:1 + # filterLimits.Tishkoff180AF 0:1 + # filterByRange.WBBCAF on + # filterLabel.WBBCAF WBBC China AF + # filter.WBBCAF 0:1 + # filterLimits.WBBCAF 0:1 + # filterByRange.ChinaMAPAF on + # filterLabel.ChinaMAPAF China ChinaMAP AF + # filter.ChinaMAPAF 0:1 + # filterLimits.ChinaMAPAF 0:1 + # filterByRange.GenomeIndiaAF on + # filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF + # filter.GenomeIndiaAF 0:1 + # filterLimits.GenomeIndiaAF 0:1 + # filterByRange.GoNLAF on + # filterLabel.GoNLAF GoNL Netherlands ~13x SR AF + # filter.GoNLAF 0:1 + # filterLimits.GoNLAF 0:1 + # Per-database AC filters (commented out: re-enable as needed) + # filterByRange.AllOfUsAC on + # filterLabel.AllOfUsAC AllOfUs AC + # filter.AllOfUsAC 0:2000000 + # filterLimits.AllOfUsAC 0:2000000 + # filterByRange.SPARKAC on + # filterLabel.SPARKAC SFARI SPARK WES AC + # filter.SPARKAC 0:2000000 + # filterLimits.SPARKAC 0:2000000 + # filterByRange.SFARI_WGSAC on + # filterLabel.SFARI_WGSAC SFARI SPARK WGS AC + # filter.SFARI_WGSAC 0:2000000 + # filterLimits.SFARI_WGSAC 0:2000000 + # filterByRange.GenomeAsiaAC on + # filterLabel.GenomeAsiaAC GenomeAsia SNVs AC + # filter.GenomeAsiaAC 0:2000000 + # filterLimits.GenomeAsiaAC 0:2000000 + # filterByRange.GenomeAsiaIndelAC on + # filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC + # filter.GenomeAsiaIndelAC 0:2000000 + # filterLimits.GenomeAsiaIndelAC 0:2000000 + # filterByRange.NPMAC on + # filterLabel.NPMAC NPM Singapore AC + # filter.NPMAC 0:2000000 + # filterLimits.NPMAC 0:2000000 + # filterByRange.KOVAAC on + # filterLabel.KOVAAC KOVA Korea AC + # filter.KOVAAC 0:2000000 + # filterLimits.KOVAAC 0:2000000 + # filterByRange.ToMMoAC on + # filterLabel.ToMMoAC ToMMo Japan AC + # filter.ToMMoAC 0:2000000 + # filterLimits.ToMMoAC 0:2000000 + # filterByRange.FinnGenAC on + # filterLabel.FinnGenAC FinnGen Finland AC + # filter.FinnGenAC 0:2000000 + # filterLimits.FinnGenAC 0:2000000 + # filterByRange.SaudiAC on + # filterLabel.SaudiAC Saudi AC + # filter.SaudiAC 0:2000000 + # filterLimits.SaudiAC 0:2000000 + # filterByRange.SweGenAC on + # filterLabel.SweGenAC SweGen Sweden AC + # filter.SweGenAC 0:2000000 + # filterLimits.SweGenAC 0:2000000 + # filterByRange.TOPMedAC on + # filterLabel.TOPMedAC TOPMed AC + # filter.TOPMedAC 0:2000000 + # filterLimits.TOPMedAC 0:2000000 + # filterByRange.ABraOMAC on + # filterLabel.ABraOMAC ABraOM Brazil AC + # filter.ABraOMAC 0:2000000 + # filterLimits.ABraOMAC 0:2000000 + # filterByRange.ALFAAC on + # filterLabel.ALFAAC ALFA AC + # filter.ALFAAC 0:2000000 + # filterLimits.ALFAAC 0:2000000 + # filterByRange.MGRBAC on + # filterLabel.MGRBAC MGRB Australia AC + # filter.MGRBAC 0:2000000 + # filterLimits.MGRBAC 0:2000000 + # filterByRange.HRCAC on + # filterLabel.HRCAC HRC AC + # filter.HRCAC 0:2000000 + # filterLimits.HRCAC 0:2000000 + # filterByRange.SGDPAC on + # filterLabel.SGDPAC SGDP AC + # filter.SGDPAC 0:2000000 + # filterLimits.SGDPAC 0:2000000 + # filterByRange.HGDP1kGAC on + # filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC + # filter.HGDP1kGAC 0:2000000 + # filterLimits.HGDP1kGAC 0:2000000 + # filterByRange.GREGoRAC on + # filterLabel.GREGoRAC GREGoR AC + # filter.GREGoRAC 0:2000000 + # filterLimits.GREGoRAC 0:2000000 + # filterByRange.SCHEMAAC on + # filterLabel.SCHEMAAC SCHEMA AC + # filter.SCHEMAAC 0:2000000 + # filterLimits.SCHEMAAC 0:2000000 + # filterByRange.GA4KAC on + # filterLabel.GA4KAC GA4K PacBio LR AC + # filter.GA4KAC 0:2000000 + # filterLimits.GA4KAC 0:2000000 + # filterByRange.CoLoRSdbAC on + # filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC + # filter.CoLoRSdbAC 0:2000000 + # filterLimits.CoLoRSdbAC 0:2000000 + # filterByRange.SVatalogAC on + # filterLabel.SVatalogAC SVatalog 101 10XG SR AC + # filter.SVatalogAC 0:2000000 + # filterLimits.SVatalogAC 0:2000000 + # filterByRange.Tishkoff180AC on + # filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC + # filter.Tishkoff180AC 0:2000000 + # filterLimits.Tishkoff180AC 0:2000000 + # filterByRange.WBBCAC on + # filterLabel.WBBCAC WBBC China AC + # filter.WBBCAC 0:2000000 + # filterLimits.WBBCAC 0:2000000 + # filterByRange.ChinaMAPAC on + # filterLabel.ChinaMAPAC China ChinaMAP AC + # filter.ChinaMAPAC 0:2000000 + # filterLimits.ChinaMAPAC 0:2000000 + # filterByRange.GenomeIndiaAC on + # filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC + # filter.GenomeIndiaAC 0:2000000 + # filterLimits.GenomeIndiaAC 0:2000000 + # filterByRange.GoNLAC on + # filterLabel.GoNLAC GoNL Netherlands ~13x SR AC + # filter.GoNLAC 0:2000000 + # filterLimits.GoNLAC 0:2000000 + # Population-specific AF/AC filters (commented out: re-enable as needed) # AllOfUs populations - filterByRange.AllOfUsAF_AFR on - filterLabel.AllOfUsAF_AFR AllOfUs African AF - filterByRange.AllOfUsAF_AMR on - filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF - filterByRange.AllOfUsAF_EAS on - filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF - filterByRange.AllOfUsAF_EUR on - filterLabel.AllOfUsAF_EUR AllOfUs European AF - filterByRange.AllOfUsAF_OCE on - filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF - filterByRange.AllOfUsAF_SAS on - filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF - filterByRange.AllOfUsAC_AFR on - filterLabel.AllOfUsAC_AFR AllOfUs African AC - filterByRange.AllOfUsAC_AMR on - filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC - filterByRange.AllOfUsAC_EAS on - filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC - filterByRange.AllOfUsAC_EUR on - filterLabel.AllOfUsAC_EUR AllOfUs European AC - filterByRange.AllOfUsAC_OCE on - filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC - filterByRange.AllOfUsAC_SAS on - filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC + # filterByRange.AllOfUsAF_AFR on + # filterLabel.AllOfUsAF_AFR AllOfUs African AF + # filter.AllOfUsAF_AFR 0:1 + # filterLimits.AllOfUsAF_AFR 0:1 + # filterByRange.AllOfUsAF_AMR on + # filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF + # filter.AllOfUsAF_AMR 0:1 + # filterLimits.AllOfUsAF_AMR 0:1 + # filterByRange.AllOfUsAF_EAS on + # filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF + # filter.AllOfUsAF_EAS 0:1 + # filterLimits.AllOfUsAF_EAS 0:1 + # filterByRange.AllOfUsAF_EUR on + # filterLabel.AllOfUsAF_EUR AllOfUs European AF + # filter.AllOfUsAF_EUR 0:1 + # filterLimits.AllOfUsAF_EUR 0:1 + # filterByRange.AllOfUsAF_OCE on + # filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF + # filter.AllOfUsAF_OCE 0:1 + # filterLimits.AllOfUsAF_OCE 0:1 + # filterByRange.AllOfUsAF_SAS on + # filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF + # filter.AllOfUsAF_SAS 0:1 + # filterLimits.AllOfUsAF_SAS 0:1 + # filterByRange.AllOfUsAC_AFR on + # filterLabel.AllOfUsAC_AFR AllOfUs African AC + # filter.AllOfUsAC_AFR 0:2000000 + # filterLimits.AllOfUsAC_AFR 0:2000000 + # filterByRange.AllOfUsAC_AMR on + # filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC + # filter.AllOfUsAC_AMR 0:2000000 + # filterLimits.AllOfUsAC_AMR 0:2000000 + # filterByRange.AllOfUsAC_EAS on + # filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC + # filter.AllOfUsAC_EAS 0:2000000 + # filterLimits.AllOfUsAC_EAS 0:2000000 + # filterByRange.AllOfUsAC_EUR on + # filterLabel.AllOfUsAC_EUR AllOfUs European AC + # filter.AllOfUsAC_EUR 0:2000000 + # filterLimits.AllOfUsAC_EUR 0:2000000 + # filterByRange.AllOfUsAC_OCE on + # filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC + # filter.AllOfUsAC_OCE 0:2000000 + # filterLimits.AllOfUsAC_OCE 0:2000000 + # filterByRange.AllOfUsAC_SAS on + # filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC + # filter.AllOfUsAC_SAS 0:2000000 + # filterLimits.AllOfUsAC_SAS 0:2000000 # SFARI SPARK WES populations - filterByRange.SPARKAF_AUT on - filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF - filterByRange.SPARKAF_NON_AUT on - filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF - filterByRange.SPARKAC_AUT on - filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC - filterByRange.SPARKAC_NON_AUT on - filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC + # filterByRange.SPARKAF_AUT on + # filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF + # filter.SPARKAF_AUT 0:1 + # filterLimits.SPARKAF_AUT 0:1 + # filterByRange.SPARKAF_NON_AUT on + # filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF + # filter.SPARKAF_NON_AUT 0:1 + # filterLimits.SPARKAF_NON_AUT 0:1 + # filterByRange.SPARKAC_AUT on + # filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC + # filter.SPARKAC_AUT 0:2000000 + # filterLimits.SPARKAC_AUT 0:2000000 + # filterByRange.SPARKAC_NON_AUT on + # filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC + # filter.SPARKAC_NON_AUT 0:2000000 + # filterLimits.SPARKAC_NON_AUT 0:2000000 # SFARI SPARK WGS populations - filterByRange.SFARI_WGSAF_AUT on - filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF - filterByRange.SFARI_WGSAF_NON_AUT on - filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF - filterByRange.SFARI_WGSAC_AUT on - filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC - filterByRange.SFARI_WGSAC_NON_AUT on - filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC + # filterByRange.SFARI_WGSAF_AUT on + # filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF + # filter.SFARI_WGSAF_AUT 0:1 + # filterLimits.SFARI_WGSAF_AUT 0:1 + # filterByRange.SFARI_WGSAF_NON_AUT on + # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF + # filter.SFARI_WGSAF_NON_AUT 0:1 + # filterLimits.SFARI_WGSAF_NON_AUT 0:1 + # filterByRange.SFARI_WGSAC_AUT on + # filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC + # filter.SFARI_WGSAC_AUT 0:2000000 + # filterLimits.SFARI_WGSAC_AUT 0:2000000 + # filterByRange.SFARI_WGSAC_NON_AUT on + # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC + # filter.SFARI_WGSAC_NON_AUT 0:2000000 + # filterLimits.SFARI_WGSAC_NON_AUT 0:2000000 # GenomeAsia SNVs populations - filterByRange.GenomeAsiaAF_NEA on - filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF - filterByRange.GenomeAsiaAF_SEA on - filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF - filterByRange.GenomeAsiaAF_SAS on - filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF - filterByRange.GenomeAsiaAF_OCE on - filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF - filterByRange.GenomeAsiaAF_AMR on - filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF - filterByRange.GenomeAsiaAF_AFR on - filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF - filterByRange.GenomeAsiaAF_WER on - filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF - filterByRange.GenomeAsiaAC_NEA on - filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC - filterByRange.GenomeAsiaAC_SEA on - filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC - filterByRange.GenomeAsiaAC_SAS on - filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC - filterByRange.GenomeAsiaAC_OCE on - filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC - filterByRange.GenomeAsiaAC_AMR on - filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC - filterByRange.GenomeAsiaAC_AFR on - filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC - filterByRange.GenomeAsiaAC_WER on - filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC + # filterByRange.GenomeAsiaAF_NEA on + # filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF + # filter.GenomeAsiaAF_NEA 0:1 + # filterLimits.GenomeAsiaAF_NEA 0:1 + # filterByRange.GenomeAsiaAF_SEA on + # filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF + # filter.GenomeAsiaAF_SEA 0:1 + # filterLimits.GenomeAsiaAF_SEA 0:1 + # filterByRange.GenomeAsiaAF_SAS on + # filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF + # filter.GenomeAsiaAF_SAS 0:1 + # filterLimits.GenomeAsiaAF_SAS 0:1 + # filterByRange.GenomeAsiaAF_OCE on + # filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF + # filter.GenomeAsiaAF_OCE 0:1 + # filterLimits.GenomeAsiaAF_OCE 0:1 + # filterByRange.GenomeAsiaAF_AMR on + # filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF + # filter.GenomeAsiaAF_AMR 0:1 + # filterLimits.GenomeAsiaAF_AMR 0:1 + # filterByRange.GenomeAsiaAF_AFR on + # filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF + # filter.GenomeAsiaAF_AFR 0:1 + # filterLimits.GenomeAsiaAF_AFR 0:1 + # filterByRange.GenomeAsiaAF_WER on + # filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF + # filter.GenomeAsiaAF_WER 0:1 + # filterLimits.GenomeAsiaAF_WER 0:1 + # filterByRange.GenomeAsiaAC_NEA on + # filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC + # filter.GenomeAsiaAC_NEA 0:2000000 + # filterLimits.GenomeAsiaAC_NEA 0:2000000 + # filterByRange.GenomeAsiaAC_SEA on + # filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC + # filter.GenomeAsiaAC_SEA 0:2000000 + # filterLimits.GenomeAsiaAC_SEA 0:2000000 + # filterByRange.GenomeAsiaAC_SAS on + # filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC + # filter.GenomeAsiaAC_SAS 0:2000000 + # filterLimits.GenomeAsiaAC_SAS 0:2000000 + # filterByRange.GenomeAsiaAC_OCE on + # filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC + # filter.GenomeAsiaAC_OCE 0:2000000 + # filterLimits.GenomeAsiaAC_OCE 0:2000000 + # filterByRange.GenomeAsiaAC_AMR on + # filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC + # filter.GenomeAsiaAC_AMR 0:2000000 + # filterLimits.GenomeAsiaAC_AMR 0:2000000 + # filterByRange.GenomeAsiaAC_AFR on + # filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC + # filter.GenomeAsiaAC_AFR 0:2000000 + # filterLimits.GenomeAsiaAC_AFR 0:2000000 + # filterByRange.GenomeAsiaAC_WER on + # filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC + # filter.GenomeAsiaAC_WER 0:2000000 + # filterLimits.GenomeAsiaAC_WER 0:2000000 # NPM Singapore populations - filterByRange.NPMAF_Chinese on - filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF - filterByRange.NPMAF_Malay on - filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF - filterByRange.NPMAF_Indian on - filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF - filterByRange.NPMAC_Chinese on - filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC - filterByRange.NPMAC_Malay on - filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC - filterByRange.NPMAC_Indian on - filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC + # filterByRange.NPMAF_Chinese on + # filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF + # filter.NPMAF_Chinese 0:1 + # filterLimits.NPMAF_Chinese 0:1 + # filterByRange.NPMAF_Malay on + # filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF + # filter.NPMAF_Malay 0:1 + # filterLimits.NPMAF_Malay 0:1 + # filterByRange.NPMAF_Indian on + # filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF + # filter.NPMAF_Indian 0:1 + # filterLimits.NPMAF_Indian 0:1 + # filterByRange.NPMAC_Chinese on + # filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC + # filter.NPMAC_Chinese 0:2000000 + # filterLimits.NPMAC_Chinese 0:2000000 + # filterByRange.NPMAC_Malay on + # filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC + # filter.NPMAC_Malay 0:2000000 + # filterLimits.NPMAC_Malay 0:2000000 + # filterByRange.NPMAC_Indian on + # filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC + # filter.NPMAC_Indian 0:2000000 + # filterLimits.NPMAC_Indian 0:2000000 # gnomAD HGDP+1kG populations - filterByRange.HGDP1kGAF_afr on - filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF - filterByRange.HGDP1kGAF_ami on - filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF - filterByRange.HGDP1kGAF_amr on - filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF - filterByRange.HGDP1kGAF_asj on - filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF - filterByRange.HGDP1kGAF_eas on - filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF - filterByRange.HGDP1kGAF_fin on - filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF - filterByRange.HGDP1kGAF_mid on - filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF - filterByRange.HGDP1kGAF_nfe on - filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF - filterByRange.HGDP1kGAF_oth on - filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF - filterByRange.HGDP1kGAF_sas on - filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF - filterByRange.HGDP1kGAC_afr on - filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC - filterByRange.HGDP1kGAC_ami on - filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC - filterByRange.HGDP1kGAC_amr on - filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC - filterByRange.HGDP1kGAC_asj on - filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC - filterByRange.HGDP1kGAC_eas on - filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC - filterByRange.HGDP1kGAC_fin on - filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC - filterByRange.HGDP1kGAC_mid on - filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC - filterByRange.HGDP1kGAC_nfe on - filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC - filterByRange.HGDP1kGAC_oth on - filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC - filterByRange.HGDP1kGAC_sas on - filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC + # filterByRange.HGDP1kGAF_afr on + # filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF + # filter.HGDP1kGAF_afr 0:1 + # filterLimits.HGDP1kGAF_afr 0:1 + # filterByRange.HGDP1kGAF_ami on + # filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF + # filter.HGDP1kGAF_ami 0:1 + # filterLimits.HGDP1kGAF_ami 0:1 + # filterByRange.HGDP1kGAF_amr on + # filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF + # filter.HGDP1kGAF_amr 0:1 + # filterLimits.HGDP1kGAF_amr 0:1 + # filterByRange.HGDP1kGAF_asj on + # filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF + # filter.HGDP1kGAF_asj 0:1 + # filterLimits.HGDP1kGAF_asj 0:1 + # filterByRange.HGDP1kGAF_eas on + # filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF + # filter.HGDP1kGAF_eas 0:1 + # filterLimits.HGDP1kGAF_eas 0:1 + # filterByRange.HGDP1kGAF_fin on + # filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF + # filter.HGDP1kGAF_fin 0:1 + # filterLimits.HGDP1kGAF_fin 0:1 + # filterByRange.HGDP1kGAF_mid on + # filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF + # filter.HGDP1kGAF_mid 0:1 + # filterLimits.HGDP1kGAF_mid 0:1 + # filterByRange.HGDP1kGAF_nfe on + # filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF + # filter.HGDP1kGAF_nfe 0:1 + # filterLimits.HGDP1kGAF_nfe 0:1 + # filterByRange.HGDP1kGAF_oth on + # filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF + # filter.HGDP1kGAF_oth 0:1 + # filterLimits.HGDP1kGAF_oth 0:1 + # filterByRange.HGDP1kGAF_sas on + # filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF + # filter.HGDP1kGAF_sas 0:1 + # filterLimits.HGDP1kGAF_sas 0:1 + # filterByRange.HGDP1kGAC_afr on + # filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC + # filter.HGDP1kGAC_afr 0:2000000 + # filterLimits.HGDP1kGAC_afr 0:2000000 + # filterByRange.HGDP1kGAC_ami on + # filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC + # filter.HGDP1kGAC_ami 0:2000000 + # filterLimits.HGDP1kGAC_ami 0:2000000 + # filterByRange.HGDP1kGAC_amr on + # filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC + # filter.HGDP1kGAC_amr 0:2000000 + # filterLimits.HGDP1kGAC_amr 0:2000000 + # filterByRange.HGDP1kGAC_asj on + # filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC + # filter.HGDP1kGAC_asj 0:2000000 + # filterLimits.HGDP1kGAC_asj 0:2000000 + # filterByRange.HGDP1kGAC_eas on + # filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC + # filter.HGDP1kGAC_eas 0:2000000 + # filterLimits.HGDP1kGAC_eas 0:2000000 + # filterByRange.HGDP1kGAC_fin on + # filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC + # filter.HGDP1kGAC_fin 0:2000000 + # filterLimits.HGDP1kGAC_fin 0:2000000 + # filterByRange.HGDP1kGAC_mid on + # filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC + # filter.HGDP1kGAC_mid 0:2000000 + # filterLimits.HGDP1kGAC_mid 0:2000000 + # filterByRange.HGDP1kGAC_nfe on + # filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC + # filter.HGDP1kGAC_nfe 0:2000000 + # filterLimits.HGDP1kGAC_nfe 0:2000000 + # filterByRange.HGDP1kGAC_oth on + # filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC + # filter.HGDP1kGAC_oth 0:2000000 + # filterLimits.HGDP1kGAC_oth 0:2000000 + # filterByRange.HGDP1kGAC_sas on + # filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC + # filter.HGDP1kGAC_sas 0:2000000 + # filterLimits.HGDP1kGAC_sas 0:2000000 # GREGoR populations - filterByRange.GREGoRAF_AFF on - filterLabel.GREGoRAF_AFF GREGoR Affected AF - filterByRange.GREGoRAF_UNA on - filterLabel.GREGoRAF_UNA GREGoR Unaffected AF - filterByRange.GREGoRAF_UNK on - filterLabel.GREGoRAF_UNK GREGoR Unknown AF - filterByRange.GREGoRAC_AFF on - filterLabel.GREGoRAC_AFF GREGoR Affected AC - filterByRange.GREGoRAC_UNA on - filterLabel.GREGoRAC_UNA GREGoR Unaffected AC - filterByRange.GREGoRAC_UNK on - filterLabel.GREGoRAC_UNK GREGoR Unknown AC + # filterByRange.GREGoRAF_AFF on + # filterLabel.GREGoRAF_AFF GREGoR Affected AF + # filter.GREGoRAF_AFF 0:1 + # filterLimits.GREGoRAF_AFF 0:1 + # filterByRange.GREGoRAF_UNA on + # filterLabel.GREGoRAF_UNA GREGoR Unaffected AF + # filter.GREGoRAF_UNA 0:1 + # filterLimits.GREGoRAF_UNA 0:1 + # filterByRange.GREGoRAF_UNK on + # filterLabel.GREGoRAF_UNK GREGoR Unknown AF + # filter.GREGoRAF_UNK 0:1 + # filterLimits.GREGoRAF_UNK 0:1 + # filterByRange.GREGoRAC_AFF on + # filterLabel.GREGoRAC_AFF GREGoR Affected AC + # filter.GREGoRAC_AFF 0:2000000 + # filterLimits.GREGoRAC_AFF 0:2000000 + # filterByRange.GREGoRAC_UNA on + # filterLabel.GREGoRAC_UNA GREGoR Unaffected AC + # filter.GREGoRAC_UNA 0:2000000 + # filterLimits.GREGoRAC_UNA 0:2000000 + # filterByRange.GREGoRAC_UNK on + # filterLabel.GREGoRAC_UNK GREGoR Unknown AC + # filter.GREGoRAC_UNK 0:2000000 + # filterLimits.GREGoRAC_UNK 0:2000000 # SCHEMA populations - filterByRange.SCHEMAAF_CASE on - filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF - filterByRange.SCHEMAAF_CTRL on - filterLabel.SCHEMAAF_CTRL SCHEMA Control AF - filterByRange.SCHEMAAC_CASE on - filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC - filterByRange.SCHEMAAC_CTRL on - filterLabel.SCHEMAAC_CTRL SCHEMA Control AC + # filterByRange.SCHEMAAF_CASE on + # filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF + # filter.SCHEMAAF_CASE 0:1 + # filterLimits.SCHEMAAF_CASE 0:1 + # filterByRange.SCHEMAAF_CTRL on + # filterLabel.SCHEMAAF_CTRL SCHEMA Control AF + # filter.SCHEMAAF_CTRL 0:1 + # filterLimits.SCHEMAAF_CTRL 0:1 + # filterByRange.SCHEMAAC_CASE on + # filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC + # filter.SCHEMAAC_CASE 0:2000000 + # filterLimits.SCHEMAAC_CASE 0:2000000 + # filterByRange.SCHEMAAC_CTRL on + # filterLabel.SCHEMAAC_CTRL SCHEMA Control AC + # filter.SCHEMAAC_CTRL 0:2000000 + # filterLimits.SCHEMAAC_CTRL 0:2000000 # WBBC China populations - filterByRange.WBBCAF_North on - filterLabel.WBBCAF_North WBBC China North Han AF - filterByRange.WBBCAF_Central on - filterLabel.WBBCAF_Central WBBC China Central Han AF - filterByRange.WBBCAF_South on - filterLabel.WBBCAF_South WBBC China South Han AF - filterByRange.WBBCAF_Lingnan on - filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF - filterByRange.WBBCAC_North on - filterLabel.WBBCAC_North WBBC China North Han AC - filterByRange.WBBCAC_Central on - filterLabel.WBBCAC_Central WBBC China Central Han AC - filterByRange.WBBCAC_South on - filterLabel.WBBCAC_South WBBC China South Han AC - filterByRange.WBBCAC_Lingnan on - filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC + # filterByRange.WBBCAF_North on + # filterLabel.WBBCAF_North WBBC China North Han AF + # filter.WBBCAF_North 0:1 + # filterLimits.WBBCAF_North 0:1 + # filterByRange.WBBCAF_Central on + # filterLabel.WBBCAF_Central WBBC China Central Han AF + # filter.WBBCAF_Central 0:1 + # filterLimits.WBBCAF_Central 0:1 + # filterByRange.WBBCAF_South on + # filterLabel.WBBCAF_South WBBC China South Han AF + # filter.WBBCAF_South 0:1 + # filterLimits.WBBCAF_South 0:1 + # filterByRange.WBBCAF_Lingnan on + # filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF + # filter.WBBCAF_Lingnan 0:1 + # filterLimits.WBBCAF_Lingnan 0:1 + # filterByRange.WBBCAC_North on + # filterLabel.WBBCAC_North WBBC China North Han AC + # filter.WBBCAC_North 0:2000000 + # filterLimits.WBBCAC_North 0:2000000 + # filterByRange.WBBCAC_Central on + # filterLabel.WBBCAC_Central WBBC China Central Han AC + # filter.WBBCAC_Central 0:2000000 + # filterLimits.WBBCAC_Central 0:2000000 + # filterByRange.WBBCAC_South on + # filterLabel.WBBCAC_South WBBC China South Han AC + # filter.WBBCAC_South 0:2000000 + # filterLimits.WBBCAC_South 0:2000000 + # filterByRange.WBBCAC_Lingnan on + # filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC + # filter.WBBCAC_Lingnan 0:2000000 + # filterLimits.WBBCAC_Lingnan 0:2000000 skipEmptyFields on track varFreqsArray shortLabel Genotyping Array Databases Combined longLabel SNV Frequencies: Genotyping-array cohorts combined (TPMI, Mexico Biobank, UK Biobank imputed) type bigBed 9 + parent varFreqs off bigDataUrl /gbdb/$D/varFreqs/_array/varFreqsArray.bb tableBrowser off visibility hide itemRgb on maxWindowToDraw 5000000 priority 0.2 mouseOver <b>Var:</b> $name<br><b>AA change:</b> $aaChange<br><b>Var type:</b> $varType<br><b>Conseq:</b> $consequence<br><b>Max AF:</b> $maxAF<br><b>Total AC:</b> $totalAC<br><b>Sources:</b> $sources filterValues.sources TPMI|TPMI Taiwan,MexBB|Mexico Biobank,UKBB|UK Biobank imputed