6a7655f06c1581853f1a028eb29e17caecfba6a0 max Wed Oct 29 07:26:54 2025 -0700 adding RNA modifications superTrack, refs #36613 diff --git src/hg/makeDb/trackDb/human/hg38/rnaMod.html src/hg/makeDb/trackDb/human/hg38/rnaMod.html new file mode 100644 index 00000000000..f8dccb80784 --- /dev/null +++ src/hg/makeDb/trackDb/human/hg38/rnaMod.html @@ -0,0 +1,37 @@ +<h2>Description</h2> +<p> +Like DNA, RNA also can carry chemical modifications. N 6‐methyladenosine (m6A), +installed onto mRNA by the METTL3/METTL14 methyltransferase complex, is the +most prevalent mRNA modification. m6A methylation regulates gene expression by +influencing numerous aspects of mRNA metabolism, including pre‐mRNA processing, +nuclear export, decay, and translation. </p> +<p> + +<h2>Display Conventions</h2> +<p>Methylated sites are highlighted. +</p> + +<h2>Data Access</h2> +<p> +todo. +</p> + +<h2>Methods</h2> +<p> +For the fetal data from Xiao 2019, data was downloaded from NCBI GEO GSE114150 in bed format and merged with a custom Python script. +</p> + +<h2>Credits</h2> +<p> +Thanks to Natacha Clairet and Guillaume Riviere for paper suggestions. +</p> + +<h2>References</h2> +<p> +Xiao S, Cao S, Huang Q, Xia L, Deng M, Yang M, Jia G, Liu X, Shi J, Wang W <em>et al</em>. +<a href="https://doi.org/10.1038/s41556-019-0315-4" target="_blank"> +The RNA N(6)-methyladenosine modification landscape of human fetal tissues</a>. +<em>Nat Cell Biol</em>. 2019 May;21(5):651-661. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31036937" target="_blank">31036937</a> +</p> +