030cc7d4165ee6b37bd4c9ecfb443fb39ac2468d max Mon Nov 3 07:59:26 2025 -0800 updating mexico biobank track, and related tracks, refs #36259 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra new file mode 100644 index 00000000000..7c17fd9fb1f --- /dev/null +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -0,0 +1,49 @@ +track varFreqs +shortLabel Variant Allele Frequencies +longLabel Variant Allele Frequencies from various population- or cohort-specific Projects +group varRep +type bed 12 +visibility hide +superTrack on + + track mexbb + shortLabel Mexico Biobank + longLabel Mexico Biobank + tableBrowser off + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/mexbb/MXBv2.vcf.gz + visibility pack + type vcfTabix + hapClusterEnabled true + dataVersion Nov 2025 + + track mcps + shortLabel Mexico City Prospective Study + longLabel Mexico City Prospective Study (MCPS) + tableBrowser off + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz + visibility pack + type vcfTabix + hapClusterEnabled true + dataVersion May 2023 (v1.2.0) + + track me + shortLabel Million Exomes + longLabel Regeneron One Million Exomes (ME) Project + tableBrowser off + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz + visibility pack + type vcfTabix + hapClusterEnabled true + dataVersion 10/04/2023, v1.1.3 + + track topmed + shortLabel NHLBI TOPMED V10 + longLabel NHLBI TOPMED V10 + type vcfTabix + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/topmed10.vcf.gz + dataVersion Freeze 10 + visibility pack