70793bfbb9eb63bf64c1809dae12476eaa7c2387
max
  Wed Dec 10 02:03:10 2025 -0800
changes after code review, refs #36822

diff --git src/hg/utils/otto/clinvar/doUpdate.sh src/hg/utils/otto/clinvar/doUpdate.sh
index 3457f88338c..07c4d43d453 100755
--- src/hg/utils/otto/clinvar/doUpdate.sh
+++ src/hg/utils/otto/clinvar/doUpdate.sh
@@ -1,14 +1,12 @@
 #!/bin/bash
 set -o errexit -o pipefail
 export PATH=$PATH:/cluster/bin/x86_64/ # for bedSort and bedToBigBed
 cd /hive/data/outside/otto/clinvar/
 if [ "$1" == "--alpha" ]; then
         ./clinVarToBed --auto --alpha
         #./clinvarSubLolly 0 --alpha
 elif [ "$1" == "-nocheck" ]; then
         ./clinVarToBed --auto
-        #./clinvarSubLolly 0 
 else
-        ./clinVarToBed --auto --maxDiff 0.1 --onlyNew
-        #./clinvarSubLolly 0.1
+        ./clinVarToBed --auto --maxDiff 0.1 --onlyNew 2>&1 | tee -a log/clinvar.log
 fi