aa145ac73643ba31fab4dadd0e2d65996ae90349
mspeir
  Wed Jun 24 07:30:04 2026 -0700
porting runBits to python3, no refs

diff --git src/utils/qa/runBits src/utils/qa/runBits
index 2ff5fcd33d0..1902be71425 100755
--- src/utils/qa/runBits
+++ src/utils/qa/runBits
@@ -1,16 +1,16 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 
 ##################################################################
 #
 #  05-24-17
 #  Matthew Speir
 #
 #  Run featureBits and check for overlap with gaps (including unbridged)
 #       
 ##################################################################
 
 import argparse
 
 from ucscGb.qa import qaUtils
 from ucscGb.qa.tables import checkGapOverlap
 
@@ -35,19 +35,19 @@
     output = ""
 
     fbCmd = ["featureBits", "-countGaps", db, table]
     fbOut, fbErr = qaUtils.runCommand(fbCmd)
     output += "\n" + fbCmd[0] + " " + fbCmd[1] + " " + fbCmd[2] + " " + fbCmd[3] + "\n" + fbErr
 
     fbGapCmd = ["featureBits", "-countGaps", db, table, "gap"]
     fbGapOut, fbGapErr = qaUtils.runCommand(fbGapCmd)
     output += "\n" + fbGapCmd[0] + " " + fbGapCmd[1] + " " + fbGapCmd[2] + " " + fbGapCmd[3] +\
               " " + fbGapCmd[4] + "\n" + fbGapErr
 
     gapOverlapOut = ''
     if table != 'gap':
         gapOverlapOut = checkGapOverlap.checkGapOverlap(db, table, checkUnbridged)
 
-    print output + gapOverlapOut
+    print(output + gapOverlapOut)
 
 if __name__ == "__main__":
     main()