89d5c7e854fc4f5360852a5cb0657e20f962ae6a angie Thu Jan 22 15:22:07 2026 -0800 Some shortening of paths where auto-collapsing didn't work, some new lineages, and tweaks to QC.6 and XFG.4.1.5 because they were assigned to single sequences instead of the appropriate branches. diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 900c03f90ac..4a1b6b1bb89 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -1017,32 +1017,34 @@ NY.26.1 NY.26 > C22883G NY.26.2 NY.26 > C20762T NY.26.3 NY.26 > G24368T NY.26.4 NY.26 > T1237C > A23532G LP.8.1.2 LP.8.1 > A23021G > T3814N NW.1 LP.8.1 > A23021G > T3814C > C25083T,C25693T NW.1.1 NW.1 > C1884T,G3871T NW.1.1.1 NW.1.1 > C23277T > G22026T > C5526N NW.1.2 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723N NW.1.2.1 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > G9646A > G28044A,G28396A QM.1 NW.1.2.1 > C14925T > C5100T,C23277T QM.2 NW.1.2.1 > A22595T > C3924N,C18486N QM.3 NW.1.2.1 > C19884T > C7732T NW.1.2.2 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > G25401A RG.1 NW.1.2.2 > A3936G > T3710C > T23600G > C9857N,A10646N -RG.1.1 NW.1.2.2 > A3936G > T3710C > T23600G > C9857T,A10646G > A23156G -RG.1.2 NW.1.2.2 > A3936G > T3710C > T23600G > C9857T,A10646G > A28468G > A23598G > G25894N,G29513N +RG.1.1 RG.1 > C9857T,A10646G > A23156G +RG.1.2 RG.1 > C9857T,A10646G > A28468G > A23598G > G25894N,G29513N +RG.2 NW.1.2.2 > A3936G > C4784T +RG.3 NW.1.2.2 > C27649T NW.1.2.3 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > T9610C,C27294T NW.1.2.4 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > A6859G,T22197C NW.1.2.5 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > T3232C,G29473A > C23191T,C25587T NW.1.2.6 NW.1 > C5144T,C11941T,C21627A > C20233T > T4723C > C7923T,C23601A > C1387N,G7936N,T19992N,C25511N,T27251N NW.1.3 NW.1 > C25355T NW.1.4 NW.1 > C18647T,A21137G,C23315T > A29359N NW.1.5 NW.1 > A27456T > A23598G NW.1.6 NW.1 > C27741T NW.1.7 NW.1 > C28519T > A18298G NW.1.7.1 NW.1.7 > G8017T NW.1.7.2 NW.1.7 > A25636T NW.1.7.3 NW.1.7 > C6627T,A23598G,C28674T NW.1.7.4 NW.1.7 > G3403A,G3404A NW.1.8 NW.1 > C26125A > C15237T NW.2 LP.8.1 > A23021G > T3814C > C7851T > C7765N,G20238N @@ -1068,30 +1070,31 @@ PF.2.1 PF.2 > T5465C,C21365T > T3055C PF.2.2 PF.2 > G15007A > T8521C,C11668T > C5178A PF.2.2.1 PF.2.2 > C22986T PF.2.3 PF.2 > T6882C,G25455A PF.2.4 PF.2 > C10138T > C5628T,A23598G PF.3 LP.8.1.6 > C29614T > C1221T PF.3.1 PF.3 > C22986T PF.4 LP.8.1.6 > A15945G,G23628A > T8929C > C22329T PF.5 LP.8.1.6 > A9328G > C20429T,C27143T > C8146T,T24796C > C5746T > A23598G > T5182N,C17766N LP.8.1.7 LP.8.1 > C9166T > G16405A > T28582N,C29642N QH.1 LP.8.1 > C9166T > G16405A > T28582C,C29642T > C22986T LP.8.1.8 LP.8.1 > C28674T PP.1 LP.8.1.8 > C21627A PP.1.1 PP.1 > A21801G PP.1.1.1 PP.1.1 > G28884C > C20404T,T21752G +PP.1.2 PP.1 > A9274G PP.2 LP.8.1.8 > G8858A PP.2.1 PP.2 > C29119T > C29675N LP.8.1.9 LP.8.1 > C22986T LP.8.1.10 LP.8.1 > A20481G > G28798A LP.8.1.11 LP.8.1 > T28861C LP.8.1.12 LP.8.1 > C27944T LP.8.1.13 LP.8.1 > T1537C,C15540T,T25285C > T1075C LP.8.1.14 LP.8.1 > T10387C LP.8.1.15 LP.8.1 > C17733T > G1922A,G16396A,A22994G > C829N LP.8.1.16 LP.8.1 > C13115T QE.1 LP.8.1.16 > C23625T LP.8.2 LP.8 > C17822T > G22021C,C22088T LP.8.2.1 LP.8.2 > C4002T,C22986T LP.9 KP.1.1.3 > G3838T,C22088T > A22896C LP.10 KP.1.1.3 > G21785A,C25613T @@ -1523,60 +1526,61 @@ QV.2 LF.7.2.2 > C11003T,G22381T LF.7.3 LF.7 > C17436T LF.7.3.1 LF.7.3 > C6402T > C22986T LF.7.3.2 LF.7.3 > C6402T > C22855T > A4457G > T6783G > C22716T LF.7.3.3 LF.7.3 > C6402T > C22855T > A4457G > T22246G LF.7.3.4 LF.7.3 > C6402T > C22855T > T22897A LF.7.3.5 LF.7.3 > C6402T > C23601T LF.7.3.6 LF.7.3 > C6402T > T23600C > C7945N,C8760N,C15857N LF.7.4 JN.1.16.1 > G22132T > C5239T,C7869T,G12892A,T16600C,T21653C,A22107G,C22993T,T28297C > C8818T,C22792T,A22893G > C21627N > C24444T,G25494A LF.7.5 LF.7 > A15828G LF.7.6 LF.7 > C29119T LF.7.6.1 LF.7.6 > G9756A,C22716T,G25489T,T29604C > C6472N,A9685N,A9688N LF.7.6.2 LF.7.6 > T15207C,C21928T > G4504A,T4579A > T22884G, G22893A , A22896C > C28462N QC.1 LF.7.6.2 > C28462T > C22792N > A22995C ,C29675N QC.2 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > G15007A > T7332C,A25020C -QC.2.1 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > T7332C,A25020C > G15007G > G15439A,A15792T > C22986T -QC.2.2 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > T7332C,A25020C > G15007G > G15439A,A15792T > C26607T > T7477N -QC.2.3 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > T7332C,A25020C > G15007G > T23986G > C4683N +QC.2.1 QC.2 > A15007G > G15439A,A15792T > C22986T +QC.2.2 QC.2 > A15007G > G15439A,A15792T > C26607T > T7477N +QC.2.3 QC.2 > A15007G > T23986G > C4683N QC.3 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > G15007A > C22313T QC.4 LF.7.6.2 > C28462T > C22792N > C11008T > G27122A > G28395A QC.4.1 QC.4 > C22986T > C26256N QC.5 LF.7.6.2 > C28462T > C22792N > C11008T > C2504T,C3903T,C7764T,A22994T, A22995T > C13965N,G14400N,G27074N,T29539N,G29540N -QC.6 LF.7.6.2 > C28462T > C22792N > C11008T > C18508T,G22103A > T1315N,C26151N +QC.6 LF.7.6.2 > C28462T > C22792N > C11008T > C18508T > G22103N > T1315N,C26151N LF.7.6.3 LF.7.6 > C936T > G8017N LF.7.6.4 LF.7.6 > C23277T > A22995C LF.7.6.5 LF.7.6 > C23277T > C23575T LF.7.7 LF.7 > G3939T LF.7.7.1 LF.7.7 > C23277T PV.1 LF.7.7.1 > C10594T > A13868G,T23600C PV.2 LF.7.7.1 > C10594T > C8407T > C23625T PV.3 LF.7.7.1 > C10594T > C22986T PV.3.1 PV.3 > C23585A LF.7.7.2 LF.7.7 > A22896C QR.1 LF.7.7.2 > T1183A,C7765T > C24130T > T17166C QR.2 LF.7.7.2 > C26022T > T18894C, C22995G > C23277T LF.7.8 LF.7 > T22993C > C7051T,A10323G > A22896C ,C23589A > T18177N LF.7.9 LF.7 > C22986T > A22896C > T22884G LF.7.9.1 LF.7.9 > G25523A > C9592T,C15660T > C4586T PY.1 LF.7.9.1 > C19029T > T27484C > A10978T PY.1.1 PY.1 > A23598G > C1722T,G8863A PY.1.1.1 PY.1.1 > G11851T > G22865T RF.1 PY.1.1.1 > C12439T RF.2 PY.1.1.1 > C14183T,C25469T RF.3 PY.1.1.1 > A6366G,T22702C > A22106G RF.4 PY.1.1.1 > C8683T +RF.5 PY.1.1.1 > A22995C > G22021T PY.1.2 PY.1 > C6781T,T6782C,C28045T PY.1.3 PY.1 > T24163C PY.1.4 PY.1 > G15380T > T21925N PY.1.4.1 PY.1 > G15380T > T21925C > C8140T > G22865T PY.1.5 PY.1 > C11173A PY.1.6 PY.1 > C29144T PY.1.7 PY.1 > C16338T PY.1.8 PY.1 > C1387T,G27516A PY.2 LF.7.9.1 > G942A PY.3 LF.7.9.1 > C17850T PY.4 LF.7.9.1 > G22567T > C22624N PY.4.1 PY.4 > C22624T > G1820A > A22995C > C14178N PY.5 LF.7.9.1 > C25624T PY.6 LF.7.9.1 > C25460T,G27788T PY.7 LF.7.9.1 > G25352T > G20915A,A21137G > A7291N,T24514N @@ -1882,39 +1886,62 @@ BA.2.86.4 BA.2.86 > T11940C,C22227T BA.2.86.5 BA.2.86 > C5575T,T6085C,A22151G,T23278C BA.2_10507_18744 BA.2 > T9866C > C2790T > C10507T > C18744T BA.2.86.6 BA.2.86 > C9226T LV.1 BA.2.86.6 > G14347A LV.2 BA.2.86.6 > G1738T,G3470A > C27059T > A708G,G2155T,G10902A,C15026T,G22599C,T22926C,T22928C > C24034N BA.2.86.7 BA.2.86 > T10819C,C28720T > T17497C MP.1 BA.2.86.7 > A23021G > C21646N,A23089N,C28115N MP.1.1 BA.2.86.7 > C21646T,A23021G,A23089G,C28115T > G22599C,G22604C BA.2.87 BA.2 > T9866C > C2790T > C18744T BA.2.87.1 BA.2.87 > G23040A , A22995C > A22206G > C541T,G542A,C2536T,C4012T,G4354T,T4379G,C5184T,C7296T,T7480C,C7764T,A10037G,C10702T,A11782G,C12008T,A12791C,C12896T,C15925T,C17644A,T19364C,C19698A,G21604A,G21786A,C21855T,T21939C,G22017T,G22132T,T22552C,A22812C,G22894T,T22896G,C22916A,T22942G,T23005G,C23423T,T23487G,A23598G,G23761A,C23934T,G23948C,A24369G,C25487A,T26311G,G26529A,C28045T,C28256T,T28474C,A28715G > C66N,A309N,G9190N,G15451N,C16575N,T23633N,C26833N BA.3 B.1.1 > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C26270T,C26577G,G26709A,A28271T,C28311T > C21762T,G22898A > T670G,G4184A,C4321T,C9534T,G10447A,C12880T,C15714T,G22775A,C26060T,C26858T,A29510C > C832T,C11235T BA.3.1 BA.3 > C29311T > G3791A,C3792A,A22812C BA.3.2 BA.3 > C11620T > C193N,C2037T,G2281T,T4579A,C5907T,G6476T,C9886T,C10747T,A12095C,T13375C,C14649T,T15047C,C21588T,G21624C,C21639T,T21864C,T22032C,T22054A,C22077T,A22122C,C22313T,A22538G,G22577T,G22604C,G22770A,A22786T,G22865T,A22881G,T22896C, A22898G ,G22899A,C22916T,T22917G,T22942G,A22996C,G23012A, C23013A, G23040A ,G23048A, C23075T ,G23149T,G23224T,G23311T,A23436G,T23485A,T23487G,G23522A,A23598G,C23625A,C23673T,A23946C,G24116A,C24117A,C24378T,C25114A,G25234A,G25699T,C25803T,A26275G,C26645T,A26771T,C27131T > G27382N,T27395N, A28996N BA.3.2.1 BA.3.2 > C23604G ,C25047G > A14920N,C17502N,C28849N,G29140N -RD.1 BA.3.2.1 > A14920G,C17502T,C28849T,G29140A > A10978G > C27382N,A27395N,T27807N +RD.1 BA.3.2.1 > A14920G,C17502T,C28849T,G29140A > A10978G RD.1.1 RD.1 > G22241T +RD.1.1.1 RD.1.1 > C29085T > C2143N,T12629N RD.1.2 RD.1 > C29160T > A8755N,C12073N BA.3.2.2 BA.3.2 > G27382C,T27395A, A28996N > A22629C,G23285T > G1043N,C7173N,G26718N RE.1 BA.3.2.2 > G1043A,C7173T,G26718T > G944A > C2592T,T6856C > T1195N -RE.1.1 BA.3.2.2 > G1043A,C7173T,G26718T > G944A > C2592T,T6856C > T1195C > G336A,A10323G,C14293T > C19707N,C21595N,T25129N,C25413N +RE.1.1 RE.1 > T1195C > G336A,A10323G,C14293T > C19707N,C21595N,T25129N,C25413N +RE.1.1.1 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > C19156T > G2494N +RS.1 RE.1.1.1 > G2494A > C4012T,C14889T +RE.1.1.2 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > G4665A,C21707T +RE.1.1.3 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C25047T +RE.1.2 RE.1 > T1195C > C203T,C5654T,C9836T,C22594T,C28987T RE.2 BA.3.2.2 > G1043A,C7173T,G26718T > A3309G > C18582N,C19029N,A29221N -RE.2.1 BA.3.2.2 > G1043A,C7173T,G26718T > A3309G > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C29160T > C1063N -RE.2.2 BA.3.2.2 > G1043A,C7173T,G26718T > A3309G > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C5884T,A10864G +RE.2.1 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C29160T > C1063N +RE.2.1.1 RE.2.1 > C1063T > C4891T,T8803C +RE.2.1.2 RE.2.1 > C1063T > C10594T > T25580C +RE.2.1.3 RE.2.1 > C1063T > C10594T > C5184T > C24109N +RE.2.2 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C5884T,A10864G,C28791T +RE.2.2.1 RE.2.2 > T1177C > G354A > C1663T +RE.2.2.2 RE.2.2 > T1177C > G10997A,G11930A > C2902N,C17766N +RU.1 RE.2.2.2 > C2902T,C17766T > C28928T > A3133N +RE.2.2.3 RE.2.2 > T1177C > C11020T +RE.2.2.4 RE.2.2 > T1177C > C13255T,A25998G > C7764T +RT.1 RE.2.2.4 > C21855T,G22081T > C1441N +RE.2.2.5 RE.2.2 > C4438T +RE.2.2.6 RE.2.2 > G3259T +RE.2.2.7 RE.2.2 > T1177C > G354A > A22461G +RE.2.2.8 RE.2.2 > T1177C > C10726T > C24042T +RE.2.3 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > A10864G > G12268A > C8208A,C12459T > C3784N,C3817N,C14029N +RE.2.4 RE.2 > C18582T,C19029T,A29221G > C28651A +RE.3 BA.3.2.2 > C19718T +RE.3.1 RE.3 > C11651A,C18508T > T13902N,C23086N BA.4_dropout B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > T670G,G4184A,C4321T,C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G > A22786C > A22688G > A29510C > C10198T > C2790T > C28724N > G12160A > G27788N > T22917N > T23018G BA.4 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > T670G,G4184A,C4321T,C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G > A22786C > A22688G > A29510C > C10198T > C2790T > C28724T > G12160A,G27788T > T22917G > T23018G BA.4.1 BA.4 > T21570G BA.4.1.1 BA.4.1 > A23570G BA.4.1.2 BA.4.1 > C14407T > C27644T,C29686N > C3176T BA.4.1.3 BA.4.1 > C28435T > C11758T > A2435G BA.4.1.4 BA.4.1 > G25266T BA.4.1.5 BA.4.1 > C20762T BA.4.1.6 BA.4.1 > C13329T BA.4.1.7 BA.4.1 > C17439T > A18941G > A6084G > A21717G > C26885T > C14407T BA.4.1.8 BA.4.1 > C28720T > C14322T,T18603C > G22599C BA.4.1.9 BA.4.1 > G22599C BA.4.1.10 BA.4.1 > G29179A > G25538T > A22622G > G22599C CS.1 BA.4.1.10 > C29784N > C6070T,G17259C > A22893G BA.4.1.11 BA.4.1 > G29179A > T22896C > C10615T,C27389T,C27476T > T15978C > G22599C > A22001G,A27946T @@ -3738,76 +3765,85 @@ PQ.2.11.1 PQ.2.11 > T5179A > T4640C, T22995C PQ.3 NB.1.8.1 > C29171T > G29234A PQ.4 NB.1.8.1 > C2842T PQ.4.1 PQ.4 > C23277T, G23599C > T22558N,C25614N,T29685N PQ.4.2 PQ.4 > C11833T > C21742T > G23126C PQ.4.3 PQ.4 > C11833T > C21742T > G22139T PQ.4.4 PQ.4 > A11319G PQ.4.5 PQ.4 > C3177T PQ.4.6 PQ.4 > G15919A > C10702N PQ.4.6.1 PQ.4.6 > C10702T > G22899A > G8114N,C9532N,C16575N PQ.4.6.2 PQ.4.6 > C10702T > G27915T > T2680N,C5178N,T20391N,C23248N RJ.1 PQ.4.6.2 > T2680C,C5178A,T20391G,C23248T > C20589T,A22012C,G28079T PQ.4.7 PQ.4 > C11833T > G13960A PQ.4.8 PQ.4 > A17409G > C26013T PQ.4.9 PQ.4 > G2534T,C5055T > A3979N,T16939N +PQ.4.10 PQ.4 > C11833T > C21742T > C20235T > T21820C > A5536G +PQ.4.10.1 PQ.4.10 > G25352T PQ.5 NB.1.8.1 > C25672T PQ.5.1 PQ.5 > G25687T > C28153T > C25517T > C7564N,C12781N PQ.5.1.1 PQ.5 > G25687T > C28153T > C25517T > C7564T,C12781T > A22012T PQ.5.1.2 PQ.5 > G25687T > C28153T > C25517T > C7564T,C12781T > T5834G > A24461G PQ.6 NB.1.8.1 > C15720T PQ.7 NB.1.8.1 > C1191T PQ.8 NB.1.8.1 > C25836T PQ.8.1 PQ.8 > T22995C > C186N PQ.9 NB.1.8.1 > T15843A > C22987T PQ.9.1 PQ.9 > T22995C > T11223N PQ.9.1.1 PQ.9 > T11223C > C8240T > G23604A ,T24377C PQ.10 NB.1.8.1 > T7492C PQ.10.1 PQ.10 > T22995C PQ.10.1.1 PQ.10.1 > C22224T > A13712N PQ.10.1.2 PQ.10.1 > C22082T PQ.10.1.3 PQ.10.1 > G25699T > C8386N PQ.10.1.4 PQ.10.1 > G1820T RH.1 PQ.10.1.4 > C13011T > A23267G,G25352T > T334N PQ.11 NB.1.8.1 > A3951G > C14599N PQ.12 NB.1.8.1 > C13968T PQ.13 NB.1.8.1 > T13764C PQ.13.1 PQ.13 > T22995C > C1213N PQ.13.2 PQ.13 > C20031T > G2035T,G3563A,G9203A,C23601T PQ.13.3 PQ.13 > C16293T,C25416T PQ.13.3.1 PQ.13.3 > C23277T > T29410N PQ.14 NB.1.8.1 > C3619T PQ.14.1 PQ.14 > A532G PQ.14.1.1 PQ.14.1 > T11371C,A16311G, T22995C > G22696N PQ.14.2 PQ.14 > C28603T > C12664T PQ.14.3 PQ.14 > C28603T > C26607T -PQ.14.3.1 PQ.14.3 > A23598G > A22896C ,G24047A > C1684T,T3477C,T25496N +PQ.14.3.1 PQ.14.3 > A23598G +RR.1 PQ.14.3.1 > A22896C ,G24047A > C1684T,T3477C,T25496N PQ.14.4 PQ.14 > C12049T PQ.15 NB.1.8.1 > C5583T > G1729N PQ.16 NB.1.8.1 > C10156T PQ.17 NB.1.8.1 > T22995C PQ.17.1 PQ.17 > C7834T > C29708N PQ.17.2 PQ.17 > C13035T +PQ.17.2.1 PQ.17.2 > C1102G > C13035N PQ.17.3 PQ.17 > C23601T PQ.17.4 PQ.17 > G23610A PQ.17.5 PQ.17 > A20658G > C29108T > C14818N PQ.17.6 PQ.17 > G25606T PQ.17.7 PQ.17 > A21343G PQ.17.7.1 PQ.17.7 > C23601T > A26046N PQ.17.7.2 PQ.17.7 > A26046G > A22896C > T6572N RK.1 PQ.17.7.2 > T6572C > G22820A PQ.17.8 PQ.17 > T12946C,C27813T,C28748T > C23664T > C23987T +PQ.17.9 PQ.17 > T15009C > C26111T +PQ.17.10 PQ.17 > T4441C +PQ.17.10.1 PQ.17.10 > C23277T +PQ.17.11 PQ.17 > C23277T +PQ.17.11.1 PQ.17.11 > C28603T > G22599A,G25726A PQ.18 NB.1.8.1 > C23601T PQ.19 NB.1.8.1 > A21713G > G22599A PQ.20 NB.1.8.1 > G22104C PQ.21 NB.1.8.1 > G22289T > G9010N PQ.22 NB.1.8.1 > G23604A PQ.23 NB.1.8.1 > C23625T PQ.24 NB.1.8.1 > T22191C > A28049N PQ.25 NB.1.8.1 > T24903C > C28957N PQ.25.1 PQ.25 > T29524C PQ.25.2 PQ.25 > C28957T > C875T,C18175T, T22995C > C1594N,C28651N PQ.25.3 PQ.25 > C28957T > C22498T PQ.25.3.1 PQ.25.3 > C21846T PQ.26 NB.1.8.1 > T28340C PQ.27 NB.1.8.1 > C18555T > A22320T PQ.28 NB.1.8.1 > C21855T @@ -3818,30 +3854,39 @@ PQ.32 NB.1.8.1 > C23277T PQ.33 NB.1.8.1 > G2324A > C11668T PQ.34 NB.1.8.1 > G23610A PQ.34.1 PQ.34 > C23277T PQ.35 NB.1.8.1 > C25844T PQ.36 NB.1.8.1 > T13120C PQ.37 NB.1.8.1 > G6446T,C26607T > T23600C PQ.38 NB.1.8.1 > C27513T > C5784T PQ.39 NB.1.8.1 > A22896C PQ.39.1 PQ.39 > G23593C PQ.40 NB.1.8.1 > T22995C > C19983T > G22203T,C23230A > A3942N,C6720N,C11479N,C14184N,C28310N PQ.41 NB.1.8.1 > G25352T > C29627T PQ.41.1 PQ.41 > A2871G > A2568G PQ.41.1.1 PQ.41.1 > G22599C, A22896G > C18646N,T19401N,T24793N PQ.42 NB.1.8.1 > T26491C,A26492T,T26497C > T22995C > C22088T,C23277T > C23896N,T24437N,T25969N +PQ.43 NB.1.8.1 > G24928T +PQ.43.1 PQ.43 > A10558G > T27811C +PQ.43.1.1 PQ.43.1 > T22995C +PQ.43.2 PQ.43 > G25440T +PQ.44 NB.1.8.1 > C3170T +PQ.45 NB.1.8.1 > C6031T +PQ.46 NB.1.8.1 > C745T +PQ.46.1 PQ.46 > C2574T > C25904T > C27247N +PQ.47 NB.1.8.1 > G22899A > G7027T > T11176N,C12970N NB.1.9 NB.1 > G14290T > C11824T > C25267T > A22896C NB.1.10 NB.1 > G14290T > C23601T NB.1.11 NB.1 > G14290T > G28817T > A3752G,G24434T NB.1.12 NB.1 > G14290T > C2135T > C8334T, A22896C NB.1.13 NB.1 > G14290T > C2388T > G3896T, A22896C > C7735N,C22570N,C23248N,C24382N XDV.1.6 XDV.1 > G5612A > C26882T > C4551T,C21871T,G22349A > G3892T, A22995C > C9985N XDV.1.7 XDV.1 > C8950T > G9203A XDV.1.7.1 XDV.1.7 > C5173T > C21627A,G21746T > C8683T PN.1 XDV.1.7.1 > C2306T > C2037T, A22995C > G26262N XDV.1.7.2 XDV.1.7 > C28606T > C29370T > T11075C XDV.1.7.3 XDV.1.7 > C5173T > A11462G,T27522G > G21753T > A2693N XDV.1.7.4 XDV.1.7 > A22995C > C5654A XDV.1.7.5 XDV.1.7 > C1812T > C7600N,T8323N XDV.1.8 XDV.1 > T2551C > T9892G XDV.1.9 XDV.1 > C6855T @@ -4082,67 +4127,72 @@ XFG.2.3 XFG.2 > G27621A XFG.2.3.1 XFG.2.3 > A22812C XFG.2.4 XFG.2 > C22088T > C19602N XFG.2.5 XFG.2 > A27853T XFG.2.5.1 XFG.2.5 > G14186A,G20342T > G3250T,G22567T,C28087T > A22812C XFG.2.6 XFG.2 > C29311T XFG.2.7 XFG.2 > C4897T XFG.2.7.1 XFG.2.7 > T1570C,T27546C > T18099A > A2410G XFG.2.7.2 XFG.2.7 > T14415C > C19572T > C25607T XFG.2.8 XFG.2 > C13426T > C26091T XFG.2.8.1 XFG.2.8 > C20930T > C29503G > A23598G XFG.2.9 XFG.2 > C25413T XFG.2.10 XFG.2 > G29702N > A10875C XFG.2.11 XFG.2 > T26491C,A26492T > T26497C XFG.2.12 XFG.2 > A5560G +XFG.2.13 XFG.2 > C4456T +XFG.2.13.1 XFG.2.13 > T16656C > G25630A XFG.3 XFG > C13608T XFG.3_10615 XFG.3 > C10615T XFG.3.1 XFG.3 > C6629T,A24813G > T17454N XFG.3.1.1 XFG.3.1 > T17454C > C19979A XFG.3.1.2 XFG.3.1 > T17454C > C11653T QK.1 XFG.3.1.2 > A13949G > G22216T > T8647N,C27297N QK.1.1 XFG.3.1.2 > A13949G > G22216T > T8647C,C27297T > G24095T > C16596N QK.2 XFG.3.1.2 > C3602T,T23600C,T28636C > G3443A QK.3 XFG.3.1.2 > G21586T QK.4 XFG.3.1.2 > A13949G > C6318T XFG.3.1.3 XFG.3.1 > T17454C > T29026C XFG.3.1.4 XFG.3.1 > T17454C > A22330G,G24368T > G18803T XFG.3.1.5 XFG.3.1 > T17454C > G22484T XFG.3.1.6 XFG.3.1 > T17454C > A25439G XFG.3.1.7 XFG.3.1 > T17454C > G22688T > C21646T > G22364N,G25563N XFG.3.1.8 XFG.3.1 > T17454C > T9412C > G3251A,C21859T > C3984T XFG.3.1.9 XFG.3.1 > T17454C > T29409C XFG.3.1.10 XFG.3.1 > T17454C > C5167T,C23673T XFG.3.1.11 XFG.3.1 > T17454C > C1288T > C29119T XFG.3.1.12 XFG.3.1 > T17454C > A5560G XFG.3.2 XFG.3 > C4763T,G6404A XFG.3.3 XFG.3_10615 > C23601T XFG.3.3.1 XFG.3.3 > C6449T +XFG.3.3.2 XFG.3.3 > C1426T,C4331T,C10718A +XFG.3.3.3 XFG.3.3 > G12569A,G22567T XFG.3.4 XFG.3_10615 > T28822G > C18885T XFG.3.4.1 XFG.3.4 > T15762C > T23600C QF.1 XFG.3.4.1 > C3695T,C9979T > T22293C QF.1.1 QF.1 > G28090T QF.1.1.1 QF.1.1 > G13998A > C25083T QF.2 XFG.3.4.1 > C27812T QF.2.1 QF.2 > T898C > T23485A QF.2.2 QF.2 > G29044A QF.2.2.1 QF.2.2 > C25214T > A22538G QF.3 XFG.3.4.1 > C6027T QF.4 XFG.3.4.1 > C28651T > C15960A QF.5 XFG.3.4.1 > C5284T QF.5.1 QF.5 > C23673T > C18175N QF.6 XFG.3.4.1 > G24434T +QF.7 XFG.3.4.1 > G25606A XFG.3.4.2 XFG.3.4 > G1379A QT.1 XFG.3.4.2 > C3817T QT.1.1 QT.1 > C18377T > T23600C QT.1.2 QT.1 > C18377T > C6005A,C27752T QT.2 XFG.3.4.2 > T6023C,A23148G,G28681T > T28648N QT.3 XFG.3.4.2 > A23598G XFG.3.4.3 XFG.3.4 > T15762C > T24289A QS.1 XFG.3.4.3 > C8419T QS.2 XFG.3.4.3 > A23598G XFG.3.4.4 XFG.3.4 > T15762C > T8566C > G15025A,G28727T > T26106N XFG.3.4.5 XFG.3.4 > T23600C > C25083T,G28287A XFG.3.4.6 XFG.3.4 > C15763T RN.1 XFG.3.4.6 > C26822T > C25708T > G1820A RN.2 XFG.3.4.6 > C28344T RN.2.1 RN.2 > A23598G > C3096N,G21255N,T28933N @@ -4182,40 +4232,41 @@ XFG.3.22 XFG.3 > G2273A,C2455T XFG.3.23 XFG.3_10615 > C3096T XFG.3.24 XFG.3_10615 > A15189G XFG.3.25 XFG.3_10615 > C6310T > C6539T > C25416T,T25557C > C22883A,C28344T > C643N,T18447N XFG.3.26 XFG.3_10615 > T20452C,A23598G XFG.3.27 XFG.3_10615 > G25793A XFG.3.27.1 XFG.3.27 > A4624G > A1588G > A5523G XFG.3.27.2 XFG.3.27 > A4624G > A1588G > C11339T,C12085T XFG.3.28 XFG.3_10615 > C24904T > C7764T,C28472T > G22113C XFG.3.29 XFG.3_10615 > T15330C,A23157G XFG.3.30 XFG.3_10615 > C10207T XFG.3.30.1 XFG.3.30 > G22218A XFG.3.30.2 XFG.3.30 > C5178A,C12641T,A23598C XFG.3.31 XFG.3 > A10317G > A22010G XFG.3.32 XFG.3_10615 > C1150T > C22127T +XFG.3.33 XFG.3_10615 > C829T XFG.4 XFG > C20178T > C683T XFG.4.1 XFG.4 > C16457T XFG.4.1.1 XFG.4.1 > C23601A XFG.4.1.2 XFG.4.1 > C25350T XFG.4.1.3 XFG.4.1 > C2509T QY.1 XFG.4.1.3 > T27428A > G23610A QY.2 XFG.4.1.3 > C18981T QY.3 XFG.4.1.3 > C2334T XFG.4.1.4 XFG.4.1 > T25139C -XFG.4.1.5 XFG.4.1 > G29706T > C21762T > C29580T > T26304N +XFG.4.1.5 XFG.4.1 > C29580T > C21762T > T26304N XFG.4.2 XFG.4 > A25134G XFG.4.3 XFG.4 > T28474A XFG.4.4 XFG.4 > G8017T XFG.4.5 XFG.4 > G22218A > A2825G XFG.5 XFG > C20178T > C10039T XFG.5.1 XFG.5 > C8152T > C6543T XFG.5.1.1 XFG.5.1 > C23625T,T25502C > C11300N,A19365N,C22570N XFG.5.1.2 XFG.5.1 > C853T > G25244T XFG.5.1.3 XFG.5.1 > C23601T XFG.5.1.4 XFG.5.1 > C2485T XFG.5.1.5 XFG.5.1 > C24034T > C22883A XFG.5.1.6 XFG.5.1 > G23624A XFG.5.1.7 XFG.5.1 > A23598G,A28081G,C29311T XFG.5.2 XFG.5 > A9079G XFG.5.2.1 XFG.5.2 > C23601T @@ -4311,37 +4362,38 @@ QQ.1 XFG.17.2.1 > G23593T,T29192C QQ.2 XFG.17.2.1 > T10771C > C11173T > A25439G > T1813N,C14178N QQ.3 XFG.17.2.1 > T10771C > C11173T > C4794T XFG.17.3 XFG.17 > G2731A > G22567T,C28528T XFG.17.4 XFG.17 > G22218A,A22595T > T1436N,C18888N,G29140N,G29414N XFG.18 XFG > C1960T,G24328T XFG.18.1 XFG.18 > G22567T > C11681N,C26058N XFG.19 XFG > C7113T,C14183T,C22419T > T6964N XFG.21 XFG > G20134T XFG.22 XFG > C20178T > G24434T XFG.22.1 XFG.22 > C449T > G22349T XFG.22.2 XFG.22 > C449T > C7834T XFG.22.3 XFG.22 > C449T > C29118T XFG.23 XFG > C4901A XFG.23.1 XFG.23 > C1288T > G22567T > T606N -XFG.23.1.1 XFG.23 > C1288T > G22567T > T606C > C29137T > C28473A,C29367T +XFG.23.1.1 XFG.23.1 > T606C > C29137T > C28473A,C29367T RB.1 XFG.23.1.1 > T22191G RB.2 XFG.23.1.1 > C16173T > C23673T -XFG.23.1.2 XFG.23 > C1288T > G22567T > T606C > C5944T,C18912T,C21676T,C29546T > C21811N -XFG.23.1.3 XFG.23 > C1288T > G22567T > T606C > C29137T > C25083T -XFG.23.1.4 XFG.23 > C1288T > G22567T > T606C > C8829T,T22334C,C25658T > C1780N,T27484N -XFG.23.1.5 XFG.23 > C1288T > G22567T > T606C > C3096T,C25613T > C15613N +XFG.23.1.2 XFG.23.1 > T606C > C5944T,C18912T,C21676T,C29546T > C21811N +XFG.23.1.3 XFG.23.1 > T606C > C29137T > C25083T +RV.1 XFG.23.1.3 > G22899A +XFG.23.1.4 XFG.23.1 > T606C > C823A,C1780T,C8829T,C25658T,T27484C > T22334C +XFG.23.1.5 XFG.23.1 > T606C > C3096T,C25613T > C15613N XFG.23.2 XFG.23 > C1288T > T23948C > C13548N,C23635N,G29179N XFG.24 XFG > C18928T > G21786T > C6286N,C11124N,C22264N,C29635N XFG.25 XFG > C18928T > C20178T > C22347T XFG.26 XFG > C20178T > G27948T XFG.28 XFG > C20178T > C18306T XFG.29 XFG > C20178T > A13444G XFG.30 XFG > C20178T > C5183T XFG.31 XFG > C20178T > G5017A XFG.32 XFG > A22320G > C11572T > C20956A > T21941C > G4255N,G29554N XFG.33 XFG > T5045C XFG.34 XFG > C20178T > T21965C XFG.35 XFG > C20178T > G28048T > C5581T,T10913C,T19158C XFG.36 XFG > C20178T > T10567C XFG.37 XFG > A29671N > C28475A > T5911C XFG.38 XFG > A29671N > C15615T > G1598A > C4893T @@ -4391,43 +4443,50 @@ XFT.1 XFT > C18060T > C22986T > C23731N,C29445N XFU B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C5239T,C7869T,G12892A,T16600C,T21653C,A22107G > C8818T > C21627A > T15207C,C21928T > G4504A,T4579A > T22884G, A22893A , T22896C > C11008T > A21026G,C23039G,T24703C,G24872T,C25006T,C28291A,G28884C,G29227T XFV B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C7869T,G12892A,T16600C,T21653C,A22107G, T28297C > C8818T,C22792T,A22893G > C21627A > C29409T > T8350C, T22896G ,A23021G,C23039G,C23277T > C13608T > C10615T > C23601T > C6449T > C4999T,G25477A XFV.1 XFV > C4794T > G22316A XFV.2 XFV > C23625T XFV.3 XFV > G19851A > G22899A XFV.4 XFV > G19851A > G29449A > C18329T XFV.5 XFV > C6539T XFV.6 XFV > G24947A XFW B.1.1 > A23063T > T22882G, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C,T22896A,G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T23008N,T23010N > G24872T > T22928C > C23039G > G22599C > C22858T > C875A,A3908G,G12892A,T16600C,T22369C,G22865T, C22995C ,G26832T > C21627A,T21653C,A22012T,A22107G,G22132T XFW.1 XFW > C16457T, G23604A > C9724N,G21901N XFW.1.1 XFW.1 > C9724T,G21901A > A23588C XFW.1.1.1 XFW.1.1 > A2818G > C27509T > A23592G XFY B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C5239T,C7869T,G12892A,T16600C,T21653C,A22107G, T28297C > C8818T,C22792T,A22893G > C21627A > T4214C,T8350C, T22896G ,A23021G,C23039G,C23277T > C20178T > C10039T > C8152T > C6543T > T4714C > G23593C,C28432T,T29164C XFY.1 XFY > A18077G > C4456T,A25067G +XFY.2 XFY > C8626T +XFY.3 XFY > C29272T XFZ B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T23008N,T23010N > G24872T > C7113T > T22928C > G22599C > C4999T > G1954A > T22896G ,C23039G > G22132T > G12892A,T16600C,C21627A,T21653C,A22107G > A23598G > G6647A > G6694A > G1148T,A22994G,C25006T,G25352T,G25552T,C26801T,C28291A,G28884C,C29272T XFZ.1 XFZ > A22486G > A22019G XFZ.2 XFZ > A28983G XGA B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C5239T, G12892A,T16600C,T21653C,A22107G, T28297C > C22792T,A22893G > C21627A > T22896G ,A23021G,C23039G,C23277T > T1501C,C19029T,C22883A,C24034T,G28913A XGA.1 XGA > C25578T XGA.2 XGA > C8140T XGA.3 XGA > C13647T,C21910T XGB B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C7869T,G12892A,T16600C,T21653C,A22107G, T28297C > C8818T,C22792T,A22893G > C21627A > C29409T > T8350C, T22896G ,A23021G,C23039G,C23277T > C13608T > C10615T > T28822G > C18885T > T15762C > T24289A > C8419T > C28737T > G1954A,T2074C,T3814C,C4999T XGC B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > T22928C > G22599C > G22132T > C5239T,C7869T,G12892A,T16600C,T21653C,A22107G, T28297C > C8818T,C22792T,A22893G > C21627A > T22896G ,A23021G,C23039G,C23277T > C4586T,C9592T > G942A,T1477A,C20178T,T25514C XGD B.1.1 > A23063T > T22882G, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > G22599C > G22132T > C5239T, G12892A,T16600C,T21653C,A22107G, > C21627A > C22986T > T22896C > T22884G > C22792T,T22930A,A23933G,C25844T,G27414A,T28297C > T20799C > C4893T > C3587T,A6277G > C13426T,T13890C,A22012C, C22995C ,C26058T XGE XFG > A23148C > G25352T > T17007C > G27754C > C23373T > C19593T > C2065T,C6541T XGF XFG > A23148C > G25352T > T17007C > G27754C > C23373T > C19593T > C10277T,A12490G,C13608T XGG XFG > C4214T , C8350T > C4586T,C9592T > A10978T,T16224C,A16687G,G20134T XGH XFG > C8350T > C9592T > C15660T > A10978T > C683T,C2334T,C2509T,T8350C,G15380T,C19029T miscBA1BA2Pre4321 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C4321T,C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > G22599N miscBA1BA2Post5386 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G22599N miscBA1BA2Post8393 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > G22599N XGJ XFG > G22217A,A23598G > T979A,C4534T,C6990T,T15939C XGK XFG > G22217A,A23598G > A5560G > C2065T,C5822T,C6541T,G7027T XGL XFG > G22217A,A23598G > A5560G > C6629T,C6723T,C7051T,T18765A XGM LP.8.1 > T17334G > C21627A > T21653C > T16600C > A23598G,G23856T > C4467T,C4893T,G7675T,C7869T,C8818T,C17436T,A20364G +XGN XFG.3.5.2 > C10369T > A6944G > C20104T,A24819G,G24872T,C25083T,G25401A,C25693T,C25925T,C27649T +XGP XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > C4893T,C6720T,C7735T,C9166A,A17460G,C18646T,C20178T,T27164C +XGQ XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > A9274G,T17268C, T29409C +XGR XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > T2074C,G3403A,G3404A,T3814C,T5701G,G17334T,A18298G,C18885T,C25708T,C26822T,T28822G +XGS XFG > C8350T > C9592T > A10978T > C3096T,C21928T, T29409C miscBA1BA2Pre10k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9866N > A22786C > A22688G > A29510C > C10198T > C22792N > A2832G > T5386G > G8393A > G22599N miscBA1BA2Post13k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > C15714T,C26060T > A20055G > C26858T > C21618T > C17410T > G27382C,A27383T,T27384C > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > A11537G > T13195C > G22599N miscBA2BA1PostSpike B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > T670G,G4184A,C4321T > C9534T > C12880T,C21618T > C17410T > C9344T,A9424G > A22786C > A22688G > C2790T > C10198N > A26530N > C9866T miscDeltaBA1Post4k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > G8393A,A11537G > T13195C > G22898A,A26530G > C23202A > C24503T > G23048A > G4181T > G210N > C21595N > G22599N miscDeltaBA1Post11k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > T13195C,C23525T,T23599G,C23604A,C26270T,C28311T > C24503T,C25000T > C22995A,A23055G,A23063T,T23075C,C23202A,A24424T,T24469A,C25584T,A27259C > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > A26530G > G23048A > G22898A > C21595N > G4181T > C6402T,C7124T > C8986T,G9053T > G210N > A11332G > A11201G > G22599N miscBA.5.2CJ.1 BM.1.1 > T23031C > C1627T > T23018C miscBA.5BA.2.75 BA.5 > A28330N > A27038N > C3796N,C3927T,C4586N,C5183T,C9866N,A12444N,G15451N