9ed022cb1f0b16bc57c95a629a0abd4243e750cc angie Tue Mar 10 15:51:25 2026 -0700 New lineages, small corrections to RD.1.1.1 and PQ.25.2, new label for split lineage. diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 4a1b6b1bb89..29efd392dba 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -1888,31 +1888,31 @@ BA.2_10507_18744 BA.2 > T9866C > C2790T > C10507T > C18744T BA.2.86.6 BA.2.86 > C9226T LV.1 BA.2.86.6 > G14347A LV.2 BA.2.86.6 > G1738T,G3470A > C27059T > A708G,G2155T,G10902A,C15026T,G22599C,T22926C,T22928C > C24034N BA.2.86.7 BA.2.86 > T10819C,C28720T > T17497C MP.1 BA.2.86.7 > A23021G > C21646N,A23089N,C28115N MP.1.1 BA.2.86.7 > C21646T,A23021G,A23089G,C28115T > G22599C,G22604C BA.2.87 BA.2 > T9866C > C2790T > C18744T BA.2.87.1 BA.2.87 > G23040A , A22995C > A22206G > C541T,G542A,C2536T,C4012T,G4354T,T4379G,C5184T,C7296T,T7480C,C7764T,A10037G,C10702T,A11782G,C12008T,A12791C,C12896T,C15925T,C17644A,T19364C,C19698A,G21604A,G21786A,C21855T,T21939C,G22017T,G22132T,T22552C,A22812C,G22894T,T22896G,C22916A,T22942G,T23005G,C23423T,T23487G,A23598G,G23761A,C23934T,G23948C,A24369G,C25487A,T26311G,G26529A,C28045T,C28256T,T28474C,A28715G > C66N,A309N,G9190N,G15451N,C16575N,T23633N,C26833N BA.3 B.1.1 > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C26270T,C26577G,G26709A,A28271T,C28311T > C21762T,G22898A > T670G,G4184A,C4321T,C9534T,G10447A,C12880T,C15714T,G22775A,C26060T,C26858T,A29510C > C832T,C11235T BA.3.1 BA.3 > C29311T > G3791A,C3792A,A22812C BA.3.2 BA.3 > C11620T > C193N,C2037T,G2281T,T4579A,C5907T,G6476T,C9886T,C10747T,A12095C,T13375C,C14649T,T15047C,C21588T,G21624C,C21639T,T21864C,T22032C,T22054A,C22077T,A22122C,C22313T,A22538G,G22577T,G22604C,G22770A,A22786T,G22865T,A22881G,T22896C, A22898G ,G22899A,C22916T,T22917G,T22942G,A22996C,G23012A, C23013A, G23040A ,G23048A, C23075T ,G23149T,G23224T,G23311T,A23436G,T23485A,T23487G,G23522A,A23598G,C23625A,C23673T,A23946C,G24116A,C24117A,C24378T,C25114A,G25234A,G25699T,C25803T,A26275G,C26645T,A26771T,C27131T > G27382N,T27395N, A28996N BA.3.2.1 BA.3.2 > C23604G ,C25047G > A14920N,C17502N,C28849N,G29140N RD.1 BA.3.2.1 > A14920G,C17502T,C28849T,G29140A > A10978G RD.1.1 RD.1 > G22241T -RD.1.1.1 RD.1.1 > C29085T > C2143N,T12629N +RD.1.1.1 RD.1.1 > C29085T > C2143N,C5100N,T12629N RD.1.2 RD.1 > C29160T > A8755N,C12073N BA.3.2.2 BA.3.2 > G27382C,T27395A, A28996N > A22629C,G23285T > G1043N,C7173N,G26718N RE.1 BA.3.2.2 > G1043A,C7173T,G26718T > G944A > C2592T,T6856C > T1195N RE.1.1 RE.1 > T1195C > G336A,A10323G,C14293T > C19707N,C21595N,T25129N,C25413N RE.1.1.1 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > C19156T > G2494N RS.1 RE.1.1.1 > G2494A > C4012T,C14889T RE.1.1.2 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > G4665A,C21707T RE.1.1.3 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C25047T RE.1.2 RE.1 > T1195C > C203T,C5654T,C9836T,C22594T,C28987T RE.2 BA.3.2.2 > G1043A,C7173T,G26718T > A3309G > C18582N,C19029N,A29221N RE.2.1 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C29160T > C1063N RE.2.1.1 RE.2.1 > C1063T > C4891T,T8803C RE.2.1.2 RE.2.1 > C1063T > C10594T > T25580C RE.2.1.3 RE.2.1 > C1063T > C10594T > C5184T > C24109N RE.2.2 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C5884T,A10864G,C28791T @@ -3698,30 +3698,31 @@ NB.1.2 NB.1 > G25352T NB.1.2.1 NB.1.2 > T2815C > C6070T,T6673C, T22995C NB.1.3 NB.1 > G14290T > G19824A NB.1.3.1 NB.1.3 > C23277T NB.1.4 NB.1 > G14290T > C26801T NB.1.5 NB.1 > G614A NB.1.5.1 NB.1.5 > C27092T > G22093C QN.1 NB.1.5.1 > G22599C > C20031N NB.1.5.2 NB.1.5 > C27092T > A22896C > C832N,T6130N,T20997N NB.1.5.3 NB.1.5 > C27092T > T22995C NB.1.6 NB.1 > G14290T > G22599C NB.1.6.1 NB.1.6 > T22995C NB.1.7 NB.1 > G14290T > C23277T NB.1.7.1 NB.1.7 > G22319T NB.1.8 NB.1 > G14290T > C5878T > C23039G > C823N,G2095N,T29164N +NB.1.8.1_no15960 NB.1 > G14290T > C5878T > C823T,G2095A,C23039G,T29164C > G22865T NB.1.8.1 NB.1 > G14290T > C5878T > C823T,G2095A,C23039G,T29164C > C15960T,G22865T PQ.1 NB.1.8.1 > T16456C PQ.1.1 PQ.1 > G28884C > T5143N PQ.1.2 PQ.1 > T22995C PQ.1.3 PQ.1 > C5526T > C11986N,C18252N,C29296N PQ.1.4 PQ.1 > G14131A > C24912T PQ.1.5 PQ.1 > C7299T > C25156T PQ.1.6 PQ.1 > G14131A > C21904T > T6954C PQ.1.6.1 PQ.1.6 > T22995C PQ.2 NB.1.8.1 > T25969C PQ.2.1 PQ.2 > T22995C PQ.2.1.1 PQ.2.1 > C10969T,C18814T > C21191T PQ.2.1.2 PQ.2.1 > C10969T,C18814T > G23593C > A9698N,C11195N,C27612N PQ.2.1.3 PQ.2.1 > C19263T PQ.2.1.4 PQ.2.1 > C2788T @@ -3829,31 +3830,31 @@ PQ.17.8 PQ.17 > T12946C,C27813T,C28748T > C23664T > C23987T PQ.17.9 PQ.17 > T15009C > C26111T PQ.17.10 PQ.17 > T4441C PQ.17.10.1 PQ.17.10 > C23277T PQ.17.11 PQ.17 > C23277T PQ.17.11.1 PQ.17.11 > C28603T > G22599A,G25726A PQ.18 NB.1.8.1 > C23601T PQ.19 NB.1.8.1 > A21713G > G22599A PQ.20 NB.1.8.1 > G22104C PQ.21 NB.1.8.1 > G22289T > G9010N PQ.22 NB.1.8.1 > G23604A PQ.23 NB.1.8.1 > C23625T PQ.24 NB.1.8.1 > T22191C > A28049N PQ.25 NB.1.8.1 > T24903C > C28957N PQ.25.1 PQ.25 > T29524C -PQ.25.2 PQ.25 > C28957T > C875T,C18175T, T22995C > C1594N,C28651N +PQ.25.2 PQ.25 > C28957T > C875T, T22995C > C1594N,C18175N,C28651N PQ.25.3 PQ.25 > C28957T > C22498T PQ.25.3.1 PQ.25.3 > C21846T PQ.26 NB.1.8.1 > T28340C PQ.27 NB.1.8.1 > C18555T > A22320T PQ.28 NB.1.8.1 > C21855T PQ.29 NB.1.8.1 > A29700G > G2840A,A15667C,G17794A, A22896C PQ.30 NB.1.8.1 > C17550T > T760C,C2110T,C6538T,A9109G,C11355T > C25693T PQ.31 NB.1.8.1 > C19662T > C23896T PQ.31.1 PQ.31 > T22995C PQ.32 NB.1.8.1 > C23277T PQ.33 NB.1.8.1 > G2324A > C11668T PQ.34 NB.1.8.1 > G23610A PQ.34.1 PQ.34 > C23277T PQ.35 NB.1.8.1 > C25844T PQ.36 NB.1.8.1 > T13120C @@ -3863,30 +3864,33 @@ PQ.39.1 PQ.39 > G23593C PQ.40 NB.1.8.1 > T22995C > C19983T > G22203T,C23230A > A3942N,C6720N,C11479N,C14184N,C28310N PQ.41 NB.1.8.1 > G25352T > C29627T PQ.41.1 PQ.41 > A2871G > A2568G PQ.41.1.1 PQ.41.1 > G22599C, A22896G > C18646N,T19401N,T24793N PQ.42 NB.1.8.1 > T26491C,A26492T,T26497C > T22995C > C22088T,C23277T > C23896N,T24437N,T25969N PQ.43 NB.1.8.1 > G24928T PQ.43.1 PQ.43 > A10558G > T27811C PQ.43.1.1 PQ.43.1 > T22995C PQ.43.2 PQ.43 > G25440T PQ.44 NB.1.8.1 > C3170T PQ.45 NB.1.8.1 > C6031T PQ.46 NB.1.8.1 > C745T PQ.46.1 PQ.46 > C2574T > C25904T > C27247N PQ.47 NB.1.8.1 > G22899A > G7027T > T11176N,C12970N +PQ.48 NB.1.8.1 > C12789T +PQ.48.1 PQ.48 > G23593C +PQ.49 NB.1.8.1 > C28657T NB.1.9 NB.1 > G14290T > C11824T > C25267T > A22896C NB.1.10 NB.1 > G14290T > C23601T NB.1.11 NB.1 > G14290T > G28817T > A3752G,G24434T NB.1.12 NB.1 > G14290T > C2135T > C8334T, A22896C NB.1.13 NB.1 > G14290T > C2388T > G3896T, A22896C > C7735N,C22570N,C23248N,C24382N XDV.1.6 XDV.1 > G5612A > C26882T > C4551T,C21871T,G22349A > G3892T, A22995C > C9985N XDV.1.7 XDV.1 > C8950T > G9203A XDV.1.7.1 XDV.1.7 > C5173T > C21627A,G21746T > C8683T PN.1 XDV.1.7.1 > C2306T > C2037T, A22995C > G26262N XDV.1.7.2 XDV.1.7 > C28606T > C29370T > T11075C XDV.1.7.3 XDV.1.7 > C5173T > A11462G,T27522G > G21753T > A2693N XDV.1.7.4 XDV.1.7 > A22995C > C5654A XDV.1.7.5 XDV.1.7 > C1812T > C7600N,T8323N XDV.1.8 XDV.1 > T2551C > T9892G XDV.1.9 XDV.1 > C6855T @@ -4163,30 +4167,32 @@ XFG.3.1.12 XFG.3.1 > T17454C > A5560G XFG.3.2 XFG.3 > C4763T,G6404A XFG.3.3 XFG.3_10615 > C23601T XFG.3.3.1 XFG.3.3 > C6449T XFG.3.3.2 XFG.3.3 > C1426T,C4331T,C10718A XFG.3.3.3 XFG.3.3 > G12569A,G22567T XFG.3.4 XFG.3_10615 > T28822G > C18885T XFG.3.4.1 XFG.3.4 > T15762C > T23600C QF.1 XFG.3.4.1 > C3695T,C9979T > T22293C QF.1.1 QF.1 > G28090T QF.1.1.1 QF.1.1 > G13998A > C25083T QF.2 XFG.3.4.1 > C27812T QF.2.1 QF.2 > T898C > T23485A QF.2.2 QF.2 > G29044A QF.2.2.1 QF.2.2 > C25214T > A22538G +QF.2.3 QF.2 > T898C > C13247T +QF.2.4 QF.2 > T898C > C21811T QF.3 XFG.3.4.1 > C6027T QF.4 XFG.3.4.1 > C28651T > C15960A QF.5 XFG.3.4.1 > C5284T QF.5.1 QF.5 > C23673T > C18175N QF.6 XFG.3.4.1 > G24434T QF.7 XFG.3.4.1 > G25606A XFG.3.4.2 XFG.3.4 > G1379A QT.1 XFG.3.4.2 > C3817T QT.1.1 QT.1 > C18377T > T23600C QT.1.2 QT.1 > C18377T > C6005A,C27752T QT.2 XFG.3.4.2 > T6023C,A23148G,G28681T > T28648N QT.3 XFG.3.4.2 > A23598G XFG.3.4.3 XFG.3.4 > T15762C > T24289A QS.1 XFG.3.4.3 > C8419T QS.2 XFG.3.4.3 > A23598G @@ -4198,41 +4204,43 @@ RN.2.1 RN.2 > A23598G > C3096N,G21255N,T28933N XFG.3.4.7 XFG.3.4 > T580A > C19972T XFG.3.4.8 XFG.3.4 > C29200T XFG.3.4.9 XFG.3.4 > G8561T XFG.3.5 XFG.3_10615 > A19540G XFG.3.5.1 XFG.3.5 > C18421T > C23625T XFG.3.5.2 XFG.3.5 > C23601T XFG.3.6 XFG.3_10615 > C9521T XFG.3.6.1 XFG.3.6 > C5178T > C18463T > G24386T > C19983N,C26111N XFG.3.6.2 XFG.3.6 > C5055T,A18836G,C28863T > A11947N XFG.3.7 XFG.3_10615 > C25546T XFG.3.7.1 XFG.3.7 > C23601T > T28382N,C10030N XFG.3.8 XFG.3 > A25448G XFG.3.8.1 XFG.3.8 > C3565T > T23427C > C29518N XFG.3.9 XFG.3_10615 > T7999C +XFG.3.9_23600 XFG.3.9 > T23600C XFG.3.10 XFG.3_10615 > C27893T XFG.3.10.1 XFG.3.10 > T3616C,C6445T,A29125G XFG.3.10.2 XFG.3.10 > A20461G > A13533N XFG.3.11 XFG > C10615T > C13608T > C15738T XFG.3.12 XFG > C10615T > C13608T > C556T XFG.3.12.1 XFG.3.12 > G29717A > C1943T, G22688T > C4900N XFG.3.13 XFG.3 > C10277T > G24398A XFG.3.13.1 XFG.3.13 > A12490G > G24095T XFG.3.13.2 XFG.3.13 > A12490G > G12080T XFG.3.14 XFG.3_10615 > C6031T,C23673T XFG.3.15 XFG.3_10615 > G28681A +XFG.3.15_23600 XFG.3.15 > T23600C XFG.3.16 XFG.3_10615 > C25096T > C3565T XFG.3.16.1 XFG.3.16 > G21753T > G15627N XFG.3.17 XFG.3 > C10993T,C16260T XFG.3.18 XFG.3_10615 > C11866T XFG.3.18.1 XFG.3.18 > A28070C > G24095T XFG.3.19 XFG.3 > C2143T XFG.3.20 XFG.3 > C6040T XFG.3.21 XFG.3 > G2185A XFG.3.22 XFG.3 > G2273A,C2455T XFG.3.23 XFG.3_10615 > C3096T XFG.3.24 XFG.3_10615 > A15189G XFG.3.25 XFG.3_10615 > C6310T > C6539T > C25416T,T25557C > C22883A,C28344T > C643N,T18447N XFG.3.26 XFG.3_10615 > T20452C,A23598G XFG.3.27 XFG.3_10615 > G25793A XFG.3.27.1 XFG.3.27 > A4624G > A1588G > A5523G @@ -4274,30 +4282,31 @@ XFG.5.2.3 XFG.5.2 > C23758T XFG.5.2.4 XFG.5.2 > A9204G XFG.5.2.5 XFG.5.2 > C6500T,C27590T,T27785C,C28344T,A29638G > C10456N,C26753N RM.1 XFG.5.2.5 > A25076G RM.2 XFG.5.2.5 > C21762T XFG.5.2.6 XFG.5.2 > C12295T > C23673T XFG.5.3 XFG.5 > C22323T > C7195N,C29272N XFG.5.4 XFG.5 > T2698C XFG.5.4.1 XFG.5.4 > G25855T QW.1 XFG.5.4.1 > G1463A > A23592G QW.1.1 QW.1 > C7834T > C22088T XFG.6 XFG > C20178T > C22883A XFG.6.1 XFG.6 > C24034T > C23595T XFG.6.2 XFG.6 > C24034T > T29409C XFG.6.2.1 XFG.6.2 > A22320G +XFG.6.2.2 XFG.6.2 > A18585T XFG.6.3 XFG.6 > C24034T > T8359C XFG.6.3.1 XFG.6.3 > C3743T > G26730A > A1194C > C920T XFG.6.3.2 XFG.6.3 > C3743T > G26730A > A1194C > A23598G > C1594N XFG.6.3.3 XFG.6.3 > C3743T > G26730A > A1194C > G28904T > G22899A > C1528N,C2226N,C14120N XFG.6.4 XFG.6 > C24034T > C8097T XFG.6.5 XFG.6 > C24034T > C23758T XFG.6.5.1 XFG.6.5 > C23601A > G3892N,C5178N,C25528N XFG.6.6 XFG.6 > C24034T > C5907T,C25282T,C25672T,A29621G > C25721T XFG.6.7 XFG.6 > C24034T > C17339T XFG.6.8 XFG.6 > C24034T > T6673C > C583T XFG.6.9 XFG.6 > C24034T > C27059T XFG.6.10 XFG.6 > C24034T > G28079T XFG.6.11 XFG.6 > C24034T > G18781A XFG.6.12 XFG.6 > C24034T > G2875A XFG.7 XFG > C20178T > A28467T @@ -4471,22 +4480,23 @@ XGF XFG > A23148C > G25352T > T17007C > G27754C > C23373T > C19593T > C10277T,A12490G,C13608T XGG XFG > C4214T , C8350T > C4586T,C9592T > A10978T,T16224C,A16687G,G20134T XGH XFG > C8350T > C9592T > C15660T > A10978T > C683T,C2334T,C2509T,T8350C,G15380T,C19029T miscBA1BA2Pre4321 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C4321T,C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > G22599N miscBA1BA2Post5386 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G22599N miscBA1BA2Post8393 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > G22599N XGJ XFG > G22217A,A23598G > T979A,C4534T,C6990T,T15939C XGK XFG > G22217A,A23598G > A5560G > C2065T,C5822T,C6541T,G7027T XGL XFG > G22217A,A23598G > A5560G > C6629T,C6723T,C7051T,T18765A XGM LP.8.1 > T17334G > C21627A > T21653C > T16600C > A23598G,G23856T > C4467T,C4893T,G7675T,C7869T,C8818T,C17436T,A20364G XGN XFG.3.5.2 > C10369T > A6944G > C20104T,A24819G,G24872T,C25083T,G25401A,C25693T,C25925T,C27649T XGP XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > C4893T,C6720T,C7735T,C9166A,A17460G,C18646T,C20178T,T27164C XGQ XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > A9274G,T17268C, T29409C XGR XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > T2074C,G3403A,G3404A,T3814C,T5701G,G17334T,A18298G,C18885T,C25708T,C26822T,T28822G XGS XFG > C8350T > C9592T > A10978T > C3096T,C21928T, T29409C +XGT JN.1 > T28297C > T22930A > G18492A ,A19326G,T21738C > T16342C,T17859C, T18894C > G15451A,C15738T, A15756T ,T15939C > T15573C,C16323T,C21627A,G22112A > C15960T,G22865T,C23039G > T11042G ,C11572T, T12789C , T12815C ,C12854T > C9866T,A10042G, A11727G ,C12473T,C12924T,G14290T > C7113T, G7842A , T8293C ,C8299T,A8390G, A8393G > T4214C,C29409T > C3096T, C5239T ,T15366C,A22995C,T23600C,G25947A,C27812T,T28822G miscBA1BA2Pre10k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9866N > A22786C > A22688G > A29510C > C10198T > C22792N > A2832G > T5386G > G8393A > G22599N miscBA1BA2Post13k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > C15714T,C26060T > A20055G > C26858T > C21618T > C17410T > G27382C,A27383T,T27384C > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > A11537G > T13195C > G22599N miscBA2BA1PostSpike B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > T670G,G4184A,C4321T > C9534T > C12880T,C21618T > C17410T > C9344T,A9424G > A22786C > A22688G > C2790T > C10198N > A26530N > C9866T miscDeltaBA1Post4k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > G8393A,A11537G > T13195C > G22898A,A26530G > C23202A > C24503T > G23048A > G4181T > G210N > C21595N > G22599N miscDeltaBA1Post11k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > T13195C,C23525T,T23599G,C23604A,C26270T,C28311T > C24503T,C25000T > C22995A,A23055G,A23063T,T23075C,C23202A,A24424T,T24469A,C25584T,A27259C > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > A26530G > G23048A > G22898A > C21595N > G4181T > C6402T,C7124T > C8986T,G9053T > G210N > A11332G > A11201G > G22599N miscBA.5.2CJ.1 BM.1.1 > T23031C > C1627T > T23018C miscBA.5BA.2.75 BA.5 > A28330N > A27038N > C3796N,C3927T,C4586N,C5183T,C9866N,A12444N,G15451N